Sequence
atgc intronic sequence ATGC exonic sequenceAGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os02g18820.2 (Oryza sativa), 5'ss of exon 14
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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GGACATGGAGCTGGTAAGAGTTCTTCCTAGTGCTGAAGATGAAGTAAACGTTGCATGCTTTCATCCTTCCCCTGGAGGTGGTCTTGTTTATGGGACCAAGgtaaatagcaaattagatcaatcaacagtaca--caacatatatttgctttgctaattca-tgcactcacac-atttgcatcag--------------------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os09g12550.1 (Oryza sativa), 5'ss of exon 13
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttat-ttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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AGACATGGAGCTTGTAAGAGTTATCCCTAGTGCTGAAGATGAAGTCAATGTCGCATGTTTTCATCCTTCCCCTGGTGCAGGTCTTGTTTATGGGACTAAGgtgagtgacaagttaggtcaatatcaaagatggaatgaatattggtatatctgatgcttatgttgaatcacag--------------------------------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G353548_T01 (Zea mays), 5'ss of exon 13
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgat-accgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaattattcaataaacaaaaaggtatggtggattgctaa-tgcttaaattgtggtgaattatatag------------------------------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G353548_T04 (Zea mays), 5'ss of exon 13
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgat-accgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
||||||||| ||||| ||||||||||| ||||| |||||||| |||||||| || ||||||||||||||||| ||||| || ||||| ||||| || |||||| | | || | | | | | ||| | ||| | | ||| ||| |||| ||||
AGATATGGAGCTTGTGAGAGTGCTTCCTAGTGCCGAAGATGAAGTCAATGTTGCATGCTTTCATCCTTTACCAGGAGGTGGCCTTGTTTATGGGACTAAGgtgggtagcaaattattcaataaacaaaaaggtatggtggattgctaa-tgcttaaattgtggtgaattatataggaag--------------------------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G007229_T01 (Zea mays), 5'ss of exon 13
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctga-taccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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AGATATGGAGCTTGTGAGAGTGCTTCCTAGCGCTGAAGATGAAGTTAATGTTGCATGCTTTCATCCTTCACCAGGAGGTGGCCTTGTTTATGGCACTAAGgtcggtagaaaactattcaataaacaaagaggtatggcggattgctaaggctttcattctggt-gaactatatag------------------------------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA19G35370.1 (Glycine max), 5'ss of exon 12
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgata--ccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataat-attaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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AGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGATGAGGTCAATGTGGCATGCTTTCATCCTTTTGCCGGAGGAGGACTAGTTTATGGAACAAAGgtatggtgttgctgggcagaccaatggggtatggtttagcactttagctttacattatttaaattatttaattgataatctttt--gcatgtgattttag-------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA03G32620.2 (Glycine max), 5'ss of exon 11
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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AGATATGGAACTTGTTAGGGTGCTTCCTAGTGCAGAAGACGAGGTCAATGTGGCATGCTTTCATCCTTTTGCTGGGGGAGGACTAGTTTATGGAACAAAGgtatgttgttgctggggcagaccgaccaatggggtatggtttagcactttagcttacactat---------ttaaattatttaattgataatctt--ttgcatgtggttgtag---------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G04140.2 (Arabidopsis thaliana), 5'ss of exon 12
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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AGATATGGAACTGGTGAGAGTACTTCCAAGCTCAGAGGATGAAGTTAATGTTGCTTGCTTTCATCCTTCTCCTGGGGGAGGTCTTGTCTATGGAACAAAGgt----aattaatcctaaatcgtaatgtgaaaaactt--------ctcggcgctaa-aatgttgacttgtattgatattt---gctca-atatttatctcag--------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G43930.1 (Arabidopsis thaliana), 5'ss of exon 12
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
||||||||| ||||| ||||| || || ||| | || ||||| || || || || || |||||||||| ||||||||||||||||| ||||| || ||||| || ||| | | | ||| | || ||||| || ||| || | ||| | | | || || | || ||| ||
AGATATGGAGCTTGTGAGAGTACTGCCAAGTTCAGAGGATGAAGTGAACGTTGCGTGTTTTCATCCTTCTCCTGGAGGAGGTCTTGTTTATGGGACAAAGgtaaacc----atattgaatcagatcattatcgattaacaatgttcggtttgggaatctgat----cattatcgactcat--gactcatgttttt-tttccgtag-----------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S58_234V6.1 (Physcomitrella patens), 5'ss of exon 13
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtaca--tctgataccgtttggaaatatttttatttttatttgttc-tcttcttcaataaaatagaat---aatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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AGATATGGAGCTTGTGAGAGTACTTCCCAGTGCTGAGGATGAAGTGAATGTGGCGTGTTTTCATCCCCAAGTTGGTGGCGGTCTTGTATATGGAACAAAGgtgagttgttcttctgtgttctggactagtatttagatatatgtgtgaatcagttgtagttctatactgtttgaagattcgttatctgagataaagtgtt----------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S150_95V6.1 (Physcomitrella patens), 5'ss of exon 12
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
||||||||| ||||| || || | || ||||||||||||||||| ||||| || ||||||||||| | ||| || ||||||| |||||||| |||||| | |||| || | | | ||| | | || || | || | | | | |||| | || || | || || | | | |||||
AGATATGGAGCTTGTGAGGGTATTACCTAGTGCTGAAGATGAGGTGAATGTGGCGTGCTTTCATCCCCAAGTTGGTGGTGGTCTTGCATATGGAACAAAGgtgagt-tgtgattcc-----------tctgtttttcaagccagtaataagtt--atcacattgtaggagtctccttttgttagtagat-ttattgtttaagctggaatattttg-------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ26270 (Selaginella moellendorffii), 5'ss of exon 13
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
|||| || |||| || |||| || || |||||||||||||| || |||||||| |||||||||||| | ||| ||||| ||||| || || || ||||| | | | || | || | | | | || | ||| | || ||
AGATTTGAAACTAGTGCGAGTTCTCCCAAGTGCTGAAGATGAAGTTAATGTAGCGTGCTTTCATCCTCGAGTTGGCGGAGGGCTTGTTTACGGCACAAAGgt------tcggcaactttccttgagatggatg-----actcggcctaatgcacaa-ataacag----------------------------------------------------------------
upper sequence: Vv07s0005g04630.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ14567 (Selaginella moellendorffii), 5'ss of exon 12
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
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AGATTTGAAACTAGTGCGAGTTCTCCCAAGTGCTGAAGATGAAGTTAATGTAGCGTGCTTTCATCCTCGAGTTGGCGGAGGGCTTGTTTACGGCACAAAGgtttga--caactttcctttagatggatg---------actcggcctaatgcacaa-ataacag----------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110365229|gb|EC927880.1|EC927880EST: TAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAG GAAGGGAAGCTGAGGGTGCTCCAATATGATGCTTCTCATGGAATGAACAGT
genomic: TAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatct ... aaaattgcagGAAGGGAAGCTGAGGGTGCTCCAATATGATGTTTCTCATGGAATGAACAGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATATGGAACTTGTTAGAGTGCTTCCCAGTGCTGAAGATGAGGTCAATGTAGCTTGCTTTCATCCTTTACCTGGAGGAGGTCTTGTGTATGGAACCAAGgtgtacatctgataccgtttggaaatatttttatttttatttgttctcttcttcaataaaatagaataatattaattttttcagcttatatccttacttctgtgtaattcttttgctgaaaattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG