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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAAGGGATGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTTAATAAGTTCATGGCTTTTGAAACTCGTGATCCATTTCTAATACGCCAGgtaaattcaacatttttataggtgctcctagtaatcaatcattgccaagttgtattttattcctttagcattatagtattcccattggcatttatttggcaagcag

Basic information

species Vitis vinifera
transcript Vv07s0005g03730.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os10g33680.1 (Oryza sativa), 5'ss of exon 11
CTTGAAGGGATGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTTAATAAGTTCATGGCTTTTGAAACTCGTGATCCATTTCTAATACGCCAGgtaaattcaacatttttataggtgctcctagtaatcaatcattgccaagttgtattttattcctttagcattatagtattcccattggcatttatttggcaagcag
||| ||  | || ||||| || || ||| | ||||| || || |||||||| || || || ||||| |||||||||||||||||||| || || |||||||| |   |||| | ||   |        |   |||  |   ||    |  |  ||   |    |  | |||  |  |||| |                        
CTTAAAACGGTGTAAACTCTCAGGGAATATATTCAACATCCTATTCAATCTCAACAAATTTATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgatcacaacttcttgccataaagcagtg--aattcactgttaatcatctaaataacaagt-tggatcatctttttatttcag----------------------

upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G148323_T01 (Zea mays), 5'ss of exon 11
CTTGAAGGGATGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTTAATAAGTTCATGGCTTTTGAAACTCGTGATCCATTTCTAATACGCCAGgtaaattcaacatttttataggtgctcctagtaatcaatcattgccaagtt--gtattttattcctttagcattatagtattcccattggcatttatttggcaagcag
||| ||  | || ||||| || |||||  | |||||||||||||||||||| || ||||||||||| |||||||||||||||||||| || || |||||||| | |  ||    || |||     |   | |        | |   |||||   || ||   |  | |   ||| |||                              
CTTAAAACGGTGTAAACTCTCAGGAAACATATTCAATATTCTTTTCAATCTCAACAAGTTCATGGCATTTGAAACTCGTGATCCATTCCTCATTCGCCAGgtgattataat-ccttaataaac-tttagatttgctgccaagtattaagttaaataattggctaatgtttaattgtag------------------------------

upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G03960.2 (Arabidopsis thaliana), 5'ss of exon 11
CTTGAAGGGATGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTTAATAAGTTCATGGCTTTTGAAACTCGTGATCCATTTCTAATACGCCAGgtaaattcaacatttttatag-gtgctcctagtaatcaa--------tcattgccaagttgtattttattcctttagcattatagt--attcccattggcatttattt-ggcaagcag------------------------------
  |||| ||||  |||||||| | ||| ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||| |||||||| || |||||||||| ||   | |     | | ||  |  ||| | ||||          | |  |||    |||    |   || |    || ||    ||   | | |     |||  |||||  ||                              
TCTGAAAGGATCGAAACTTTCAGCAAACGTTTTCAATATACTCTTCAACCTTAATAAGTTCATGGCATTTGAAACACGTGACCCATTTCTCATTCGCCAGgtaagtttggcttaccagtggagtttttatagcactcaagagggaaaaaaataacaaagaatatgacttcttttaactgctaaaggcagtttgtagtagttcggattgaggcaattagaacaagtataattctctttcattgctgtag

upper sequence: Vv07s0005g03730.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G44090.1 (Arabidopsis thaliana), 5'ss of exon 11
CTTGAAGGGATGCAAACTTTCTGGAAATGTTTTCAATATTCTTTTCAATCTTAATAAGTTCATGGCTTTTGAAACTCGTGATCCATTTCTAATACGCCAGgtaaattcaacatttttataggtgctcctagtaatcaatcattgccaagttgtattttattcctttagcattatagtattcccattggcatttatttggcaagcag
  |||| | || |||||||||||||||| |||||||||| || || || || || || |||||||| |||||||| ||||| || ||||| || || ||||||||   |   ||| |||||    | |      |   | |||  |||    |  ||||    || |   |  || || |   ||    ||| ||     ||    
TCTGAAAGCATCCAAACTTTCTGGAAATATTTTCAATATACTCTTTAACCTGAACAAATTCATGGCGTTTGAAACCCGTGACCCTTTTCTCATTCGTCAGgtaaacataggttttctatagagttttcctccctttggttatt--caatccttcgtttagctgttgaaactgttactactga-atatttattaatgccataaa---

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161708749|gb|FC060060.1|FC060060
EST:     TTAATAAGTTCATGGCTTTTGAAACTCGTGATCCATTTCTAATACGCCAG                         GAACGAGAGGATCCAACTTTGACAGAGTGGGACCGCTTTGCACATAGAGAA
genomic: TTAATAAGTTCATGGCTTTTGAAACTCGTGATCCATTTCTAATACGCCAGgtaaattcaa ... tggcaagcagGAACGAGAGGATCCAACTTTGACAGAGTGGGACCGCTTTGCACATAGAGAA