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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTTTGATCCATCCCTTTTTTGATGAGCTACGTGAGCCAAACACCCGTCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaattattttaaaattattctttttgctgttttttatcccagtgaaatggctgaccaatgtttgttattgctgcttcgactgatcag

Basic information

species Vitis vinifera
transcript Vv07s0005g02100.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv07s0005g02100.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os05g04340.1 (Oryza sativa), 5'ss of exon 12
GAGGCTTTGATCCATCCCTTTTTTGATGAGCTACGTGAGCCAAACACCCGTCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaattattttaaaattattctttttgctgttttttatcccagtg---aaatggctgaccaatgt-ttgttat-tgctgcttcgactgatcag-----
|| || |||||||||||||| || ||||| || ||||| |||||||||||  | || || || ||||||||||| ||  | |||||||||||||| ||||||| |  ||     |        | | |  |     |  |    | |     ||   | || |||  | |  |||| | ||  |  | | |||  |     
GAAGCATTGATCCATCCCTTCTTCGATGAACTCCGTGATCCAAACACCCGCTTACCGAACGGCCGTTTCCTTCCTCCTCTCTTCAACTTCAAGCCCCATGgta-agcttgcaacaccggctgacatatgacatgcgtagacgaaaatttctgaaccaccgatcaacttataattatctactaatctggccgatttgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262991|gb|CA814054.1|CA814054
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|254916678|gb|GR905504.1|GR905504
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|110360806|gb|EC924193.1|EC924193
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|33405222|gb|CF210849.1|CF210849
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTGGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|110383074|gb|EC947423.1|EC947423
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTGGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|110378688|gb|EC943832.1|EC943832
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTGGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|34416450|gb|CF415204.1|CF415204
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
EST: gi|110700287|gb|EE078155.1|EE078155
EST:     TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATG                         AACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG
genomic: TCTGCCAAATGGACGTTTCCTTCCCCCATTGTTCAACTTCAAGCCTCATGgtacaaatta ... gactgatcagAACTAAAGGGCGTGCCTGTTGATATGTTGGTGAAGTTGATCCCAGAACATG