Sequence
atgc intronic sequence ATGC exonic sequenceCAGCCAAGATCAAGTCAATTAAGAGAACAATGCGCTCTTCCACTGCATTGGCTTTCAAAGATGAACTCAAGGCAAGGAAACGGGTTCTTCGGAAGCTAGGgtaatgaaatttctatgtttcatttcaaccttagaactaggaaaagatgtttttttctttttttggttgtggatgttcctttcctggcagctgcttaatt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os12g18140.1 (Oryza sativa), 5'ss of exon 12
CAGCCAAGATCAAGTCAATTAAGAGAACAATGCGCTCTTCCACTGCATTGGCTTTCAAAGATGAACTCAAGGCAAGGAAACGGGTTCTTCGGAAGCTAGGgtaatgaaatttctatgtttcatttcaaccttagaactaggaaaagatgtttttttctttttttggttgtggatgttcctttcc--tggcagc--tgcttaatt
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CAACCAAAATAAAGGCCATTAAAAGAACAATGCGGTCTTCCACTGCTTTAGCCTTCAAGGATGAGCTCAAGGCCCGAAAACGGGTTCTTCGTAGACTGGGgtaatg---ctttgatgcatcctttgacacgtata-ttctgataatatgctgatttggaattcagaatgagtgtctacatgtctaatgattgccatgcataaga
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G040995_T02 (Zea mays), 5'ss of exon 12
CAGCCAAGATCAAGTCAATTAAGAGAACAATGCGCTCTTCCACTGCATTGGCTTTCAAAGATGAACTCAAGGCAAGGAAACGGGTTCTTCGGAAGCTAGGgtaatgaaattt-ctatgtttcatttcaaccttagaactaggaaaagatgtttttttctttttttggttgtggatgttcctttcctggcagctgcttaatt
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CAGCCAAAATAAAGTCCATAAAGAAAACAATGCGGTCTTCCACCGCTTTAGCTTTCAAGGATGAACTCAAGGCCCGGAAACGTGTTCTTCGCAGGCTGGGgtattgcattttattctgacataaattgattctttg-ccaggttttgctggtttggtacttttaagatgaagtgccctacttacatatataatccccgacc
upper sequence: Vv06s0009g01750.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G59760.1 (Arabidopsis thaliana), 5'ss of exon 12
CAGCCAAGATCAAGTCAATTAAGAGAACAATGCGCTCTTCCACTGCATTGGCTTTCAAAGATGAACTCAAGGCAAGGAAACGGGTTCTTCGGAAGCTAGGgtaa-------tgaaatttctatgtttcatttcaaccttagaactaggaaaagatgtttttttctttttttggttgtggatgttcctttcctggcagctgcttaatt--------------------------------------------------------------------
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TAGCCAAGATCAAGTCACTTAAGAAAACTGTCCGATCGTCAACAGCATTGGCGTTTAAAGATGAACTCAAGGCCAGAAAGCGTGTTTTACGAAGGCTAGGgtaaatatttgctaaatttatttcattcactttcaaaatatacttgtgaaaccaactcaatcttatacgtcagctac--atcattctatcatgct--ctttttaatgttatgggactgtatgttccattgctgattctattagcttaatttttatcattatgctattgaacgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110377496|gb|EC942564.1|EC942564EST: GCTTTCAAAGATGAACTCAAGGCAAGGAAGCGGGTTCTTCGGAAGCTAGG GTATGTCACAAGTGACAACGTTGTGGAGTTGAAGGGGAAGGTTGCTTGTGA
genomic: GCTTTCAAAGATGAACTCAAGGCAAGGAAACGGGTTCTTCGGAAGCTAGGgtaatgaaat ... tttacttcagGTATGTCACAAGTGACAACGTTGTGGAGTTGAAGGGGAAGGTTGCTTGTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCCAAGATCAAGTCAATTAAGAGAACAATGCGCTCTTCCACTGCATTGGCTTTCAAAGATGAACTCAAGGCAAGGAAACGGGTTCTTCGGAAGCTAGGgtaatgaaatttctatgtttcatttcaaccttagaactaggaaaagatgtttttttctttttttggttgtggatgttcctttcctggcagctgcttaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttcc