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AGCATTCGCTACATACACCAATGCTAAAAGGATAGTCAAGCTGGTGAATGATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatctttaattaactttccagatggtgcaatataattttgtttgctcgcacttgtgtggccacaattacagttgaaatgtctaatgagtaagtt...
species | Vitis vinifera |
transcript | Vv06s0004g06020.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCAEST: gi|46917547|gb|CN546876.1|CN546876
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCAEST: gi|110731931|gb|EE106772.1|EE106772
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCAEST: gi|30251461|gb|CB969194.1|CB969194
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCAEST: gi|30251459|gb|CB969192.1|CB969192
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCAEST: gi|110701622|gb|EE079402.1|EE079402
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAAGTGCTTATTCCAEST: gi|28960619|gb|CB340317.1|CB340317
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCAEST: gi|30251485|gb|CB969218.1|CB969218
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCAEST: gi|30135822|gb|CB921160.1|CB921160
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
EST: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAG GTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
genomic: ATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatc ... aaaatttcagGTTGTTTTTGTTCCAAATTATAATGTGTCTGTGGCAGAGGTGCTTATTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCATTCGCTACATACACCAATGCTAAAAGGATAGTCAAGCTGGTGAATGATGTTGGTGCTGTTGTCAACACTGATCCTGAAGTCAATGAGTATTTGAAGgtaaaatatctttaattaactttccagatggtgcaatataattttgtttgctcgcacttgtgtggccacaattacagttgaaatgtctaatgagtaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG