1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TCTTGTGCTTGTTCATTCTCTCGTCCAGTTTCGGCTTTGTCGGAATCTGGGTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAGgtaacccatctttgccaaaatatctaacttatcaatttcaacaaagtttcgattttctgctcattcctttgcag
species | Vitis vinifera |
transcript | Vv06s0004g02140.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAG GATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGAEST: gi|110698510|gb|EE076088.1|EE076088
genomic: GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAGgtaacccatc ... tcctttgcagGATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGA
EST: GTGGGGCTGACCATCTATGTGAC-CTGAAAGCATTTGCTGGCTTTTGAAG GAT-GGGACTGGAA-CGCACCTTGGAEST: gi|46918193|gb|CN547522.1|CN547522
genomic: GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAGgtaacccatc ... tcctttgcagGATAGGGACTGGAAGCGGACCTTGGA
EST: GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAG GATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGA
genomic: GTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAGgtaacccatc ... tcctttgcagGATAGGGACTGGAAGCGGACCTTGGAGCTTCCTCAGAAGCTGACTGTGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGTGCTTGTTCATTCTCTCGTCCAGTTTCGGCTTTGTCGGAATCTGGGTGGCGCTGACCATCTATGTGACACTGAGAGCATTTGCTGGCTTTTGGAGgtaacccatctttgccaaaatatctaacttatcaatttcaacaaagtttcgattttctgctcattcctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG