Sequence
atgc intronic sequence ATGC exonic sequenceGCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAGgtgggttactgaaaaccctttcatgcctttggtttatatgctcatttcattatttattgtcctctaccatcatcgttaatctgaataaatcaaatggaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G45990.1 (Glycine max), 5'ss of exon 12
GCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAGgtgggttactgaaaaccctttcatgcctttggtttatatgctcatttcattatttattgtcctctaccatcatcgttaatctgaataaatca-aatggaacag
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GTCCATTGGGAAGCCGTGCAGCAAAAGCAATTGGCTTCATTGACATGATGATTGACTATTCGTTTACCAATGCACCACTGCAGAAAGAACTACATGCTGgtaaatgttt------ttcttgagattcttcctttctgaaatgacctttctccacctttttgtttgcaactacttacactttggagttgttacaacag-----
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA12G03060.1 (Glycine max), 5'ss of exon 13
GCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAGgtgggttactgaaaaccctttcatgcctttggtttatatgctcatttcattatttattgtcctctaccatcatcgttaatctgaataaatcaaatggaacag
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GTCCACTGAGAAGTCGAGCTGCAAAAGCTATTGGATTTATTGATATGATGATTGATTACTCATCAGCCAATGCACCTCTACAGAAAGAAGTATTAGCAGgtaacattttcatcagaattat-tccttgtaatgtacaggttccattttcaatctgtgattatttgc----accactgagttga-tattttgtcttgcag--
upper sequence: Vv06s0004g01310.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA11G10770.1 (Glycine max), 5'ss of exon 12
GCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAGgtgggttactgaaaaccctttcatgcctttggtttatatgctcatttcattatttattgtcctctaccatcatcgttaatctgaataaatcaaatggaacag
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GTCCACTGAGAAGTCGGGCTGCAAAGGCTATTGGATTCATTGATATGATGATCGATTACTCATCAGCCAATGCACCTCTACAGAAAGAACTATCAGCAGgtaacattttcatcagaattat-tacttgtaatgtacacgttccattttcaatctgtgattatttgc----acaactgagttgaa---attttgtcgtgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110690465|gb|EE067586.1|EE067586EST: GATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAG ATGAGGTGGGGAACACTGCTGCCTTCTTGGCATCACCTCTGGCATCTGCCA
genomic: GATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAGgtgggttact ... aatggaacagATGAGGTGGGGAACACTGCTGCCTTCTTGGCATCACCTCTGGCATCTGCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCCACTAAGAAGCCGTGCTGCAAAAGCAATTGGATTTATTGATACAATGATCGAGTATTCGCTGGCTAATGCACCTCTGCAGAAAGAACTAAGTGCAGgtgggttactgaaaaccctttcatgcctttggtttatatgctcatttcattatttattgtcctctaccatcatcgttaatctgaataaatcaaatggaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC