Sequence
atgc intronic sequence ATGC exonic sequenceAAGAGAGAGAGCAGAGAGGACCAAAGCTGAGGACTTTGATGCTGAGGAGGGAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAAgtttgtctttctaccatttatgatattcaacatattattagcattttttttttgcttttatgcctgtcatttatgtgtcaaggaagtttctactatgtctatgtttggcctcacaaactaacttctgatccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os07g38760.1 (Oryza sativa), 5'ss of exon 12
AAGAGAGAGAGCAGAGAGGACCAAAGCTGAGGACTTTGATGCTGAGGAGGGAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAAgtttgtctttct-accatttatgatattcaacatattattagcattttt--tttttgcttttat--gcctgtcatttatgtgtcaaggaagtttctactatgtctatgtttggcctcac-aaactaacttctgatccag--------------------------------------------
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AAGAGAAAGGTCAGAGAGATCAAAGGCAGAAGATTTTGATGCTGATGAAGGAGAACTACTCAAAGAAGAGAATGAGCAGGAGGAGGAAGTGTTTGATCAGgttcgtgtatctcgtgactcccagcggctgggagtcatgtaacattaaaagacttaacttttgttagatgaatatttatattggacaaaaggggactgtatgaataacttcttttttactggatggaatattagtcttctaaaagttgattctgttaacactagtttttaaaataatttacag
upper sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G12120.1 (Glycine max), 5'ss of exon 12
AAGAGAGAGAGCAGAGAGGACCAAAGCTGAGGACTTTGATGCTGAGGAGGGAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAAgtttgtctttctaccatttatgatattcaacatattattagcattttttttttgcttttatgcctgtcatttatgtgtcaaggaagtttctactatgtctatgtttggcctcacaaactaacttctgatccag
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ACGAGAGAGAGCAGAGAGGACCCAAGCTGAAGATTTTGATGCTGAAGAGGGGGACCTGATTAAAGAGGAAAATGAACAAGAGGAAGAAGTTTTTGATCAAgttagttgtttaatc-taaaaataatttaaaacaccataagtactggactactatctttgtatttttaagtt-tatgcagatcagtttcctg----gtcttccttctaatgtatga--ttacat-tgtcccag
upper sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G28950.1 (Glycine max), 5'ss of exon 14
AAGAGAGAGAGCAGAGAGGACCAAAGCTGAGGACTTTGATGCTGAGGAGGGAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAAgtttgtctttctaccatttatgatattcaacatattattagcattttttttttgcttttatgcctgtcatttatgtgtcaaggaagtttctactatgtctatgtttggcctcacaaactaacttctgatccag
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ACGAGAGAGAGCAGAGAGGACCCGAGCTGAAGATTTTGATGCTGAAGAGGGGGAACTGATTAAAGAGGAAAATGAACAAGAGGAGGAAGTTTTTGATCAAgttagttgtttaatc-taaaaataatttaaaacatcttaagtactggactactatctttgtatttttaagtt-tatgttgatcagtttcctggtcttccttctaatgtatgtatacattgtcccag-------
upper sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G19820.1 (Arabidopsis thaliana), 5'ss of exon 12
AAGAGAGAGAGCAGAGAGGACCAAAGCTGAGGACTTTGATGCTGAGGAGGGAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAAgtttgtctttctaccatttatgatattcaacatattattagcattttttttttgcttttatgcctgtcatttatgtgtcaaggaagtttctactatgtctatgtttggcctcacaaactaacttctgatccag
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GCGAGAGAGGGGAGAGAGGGCCCATGCTGAAGACTTTGACGCTGAAGAGGGAGAGCTTATTAAAGAGGAAAATGAGCAAGAGGAAGAAATTTTTGATCAAgtcagt-tttcgctgattcaccct-ttgaaagtat-actatcttcaatgttctaatttt-tgtttttgaaatag-----------------------------------------------------------
upper sequence: Vv06s0004g00500.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S207_33V6.1 (Physcomitrella patens), 5'ss of exon 12
AAGAGAGAGAGCAGAGAGGACCAAAGCTGAGGACTTTGATGCTGAGGAGGGAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAAgtttgtctttctaccatttatgatattcaacatattattagcattttttttttgcttttatgcctgtcatttatgtgtcaaggaagtttctactatgtctatgtttggcctcacaaactaacttctgatccag
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AAGAGAGAGAGCTGAGCGAACCCAAACTGAGGACTTTGACGCGGAGGAAGGGGAACTCCTTGAAGAAGAAAACGAACAAGAAGAGGAAGTCTTCGAGCAGgtctgttgtatcagcgt-----attgtctactttttatt--cattctttcatagttagttcatc-gccgttaacattttaaca-----tctgttatcttttggtat---tctgcag-----------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110690073|gb|EE066851.1|EE066851EST: GAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAG GTGGGTGAAATTTTGGGAACTTTGATCAAGACATTCAAGGCATCTTTCTTG
genomic: GAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAAgtttgtcttt ... tctgatccagGTGGGTGAAATTTTGGGAACTTTGATCAAGACATTCAAGGCATCTTTCTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGAGAGAGAGCAGAGAGGACCAAAGCTGAGGACTTTGATGCTGAGGAGGGAGAATTGCTCAAAGAAGAAAATGAGCAAGAAGAAGAAGTTTTTGATCAAgtttgtctttctaccatttatgatattcaacatattattagcattttttttttgcttttatgcctgtcatttatgtgtcaaggaagtttctactatgtctatgtttggcctcacaaactaacttctgatccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT