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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCACAAGTTGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaatttttatttttgggattgatttggtttatgttaggttgttttttttcagtccttccagttttggcatatgattgctcctgtcttgcag

Basic information

species Vitis vinifera
transcript Vv05s0077g02310.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0077g02310.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT4G15900.1 (Arabidopsis thaliana), 5'ss of exon 12
GATCCACAAGTTGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaatttttatttttgggattgatttggtttatgttaggtt--gttttttttcagtccttccagttttggcatatgattgctcctgtcttgcag-------------------------------------
|| ||||||||||| || || ||||| ||||| |||||||| || ||||||||| |||||||||  | ||||  |||  |     ||| ||    |||   |   | || ||| | |||||||   ||||        ||||| |     |   |                                     
GACCCACAAGTTGTCACCGGATCCCATGACACGACCATTAAATTTTGGGACCTTCGATATGgtatatcttatcattgtaacca--ttgtttggacttaaaatccatattatttaaatccttccttatttgattatcagttgctgcaaatatatggtttcatttgaataatgctgtattattattatatgcag

upper sequence: Vv05s0077g02310.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S402_49V6.1 (Physcomitrella patens), 5'ss of exon 11
GATCCACAAGTTGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTT-----AGATATGgtaatttttatttttgggattgatttggtttatgttaggttgttttttttcagtccttccagttttggcatatgattgctcctgtcttgcag--------------------------------------------------------------------------------------
||||||||||||||||| || || ||||||||||| |||||  | ||||| |||     || | ||     ||||  |  ||   ||    || ||| |          |||| | |||   ||  ||||||  | |  |  |||| || | ||                                                                                          
GATCCACAAGTTGTAACAGGATCACACGACACAACTATTAAACTTTGGGATCTTGCTGCAGgtttgtagtcttttcctgatgtagttttcctgttttttcaacatccagttttgtgcagctgttttagtttt--cttcagcctgcttcttttttttctttttcttttttgtttttcctgtcttgtagaggttagagcgttgtactttttccttatcttccatcgtacttgtgcaatttgagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110416775|gb|EC982779.1|EC982779
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|77578499|gb|DV218043.1|DV218043
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|254917683|gb|GR903335.1|GR903335
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|349818063|gb|FQ408838.1|FQ408838
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|351038798|gb|FQ464664.1|FQ464664
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|110384526|gb|EC948969.1|EC948969
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|110724126|gb|EE099691.1|EE099691
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|110418369|gb|EC984516.1|EC984516
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|110418288|gb|EC984425.1|EC984425
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
EST: gi|161707291|gb|FC057696.1|FC057696
EST:     TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATG                         GAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG
genomic: TGTAACTGGCTCCCACGACACAACCATTAAGTTCTGGGACCTTAGATATGgtaattttta ... tgtcttgcagGAAAGACGATGGCAACTCTCACACACCATAAGAAATCTGTGAGGGCAATGG