Sequence
atgc intronic sequence ATGC exonic sequenceATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os05g29050.1 (Oryza sativa), 5'ss of exon 10
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttc-actacatactc--cctagttcttct-ttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcag
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ATATCCTCGCATGCCTTGGCATGATGTTCAGTGTGCTCTCTACGGTCCACCTTGTCGGGATGTTGCAAGGCATTTTGTTCAGCGCTGGAATTATGCAAAGgtttgtcttttccattgcatactcatcatagtcttccccttcattattgtaaataaaataccttttttttccag----------------
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g20860.1 (Oryza sativa), 5'ss of exon 9
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcag
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ATATCCTCGCATGCCCTGGCATGATGTTCAGTGTGCTCTTTATGGTCCTGCATGCCGAGACATAGCAAGGCATTTTGTTCAGCGCTGGAACTATGCAAAGgtatgtttactggtta-atattactca---tccctatcaccgttgaaattgacaactcaatcttatgcag----------------
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G066485_T01 (Zea mays), 5'ss of exon 10
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaa--gtataataaaccttttatctcaatacaagcatacttttctgcag
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ATATCCCCGCATGCCTTGGCATGATGTTCAGTGTGCTCTCTATGGCCCACCTTGCCGTGATGTAGCGAGGCATTTTGTTCAGCGCTGGAATTATGCAAAGgttgcttatatccttgtggtctgctta-----tcatagaaagcggtaaactaattgtttttttttctttcag----------------
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G04620.1 (Glycine max), 5'ss of exon 11
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagca-tacttttctgcag-----------
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ATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGCCGTGACATTGCTAGGCACTTTGTTCAGCGATGGAATTATGCCAAGgttagtcttattttgcaattgcattgaagtcttggagcattctggtcctattcctatattccctaaataggaaataatattttttttattaacgtcag
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA15G16270.1 (Glycine max), 5'ss of exon 11
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagca-tacttttctgcag-----------
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ATATCCTCGTATGCCTTGGCATGATGTTCATTGTGCCCTTTGGGGACCACCTTGCCGTGACATTGCTAGGCACTTTGTTCAGCGATGGAATTATGCCAAGgttagtcttattttgcagttgcattgaagtcttgaagcattctggtcctattcctatattcccaaaataggaaataatattttttttattaacatcag
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT3G16785.1 (Arabidopsis thaliana), 5'ss of exon 11
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctc---aatacaagcatacttttctgcag
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GCATCCACGGATGCCTTGGCATGATGTGCATTGTGCTTTATGGGGACCACCTTGCCGTGATGTGGCTAGGCACTTTGTTCAACGCTGGAACTATGCTAAGgtt--------cacc-catacttctttaactttcttctatctgtttgtttttcctgttattaccgtaacataaccattgtgtttttcag
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ21271 (Selaginella moellendorffii), 5'ss of exon 11
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcag
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AACACCTCGCATGCCATGGCATGATATTCAGTGTGCAATATGGGGTCCAGCTTGTCGGGATGTCGCACGGCATTTTGTCCAGCGTTGGAATTATGCAAAGgt--aaggcaccagtgt-tacaatctgtttct-------gaaattttgtagtgttttgttctcag---------------------
upper sequence: Vv05s0077g01830.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ12042 (Selaginella moellendorffii), 5'ss of exon 11
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcag
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AACACCTCGTATGCCTTGGCATGATATTCAGTGTGCAATATGGGGTCCAGCTTGTCGGGATGTCGCAAGGCATTTTGTCCAGCGTTGGAATTATGCAAAGgtaagggac--cagtgt--------taatatctgtttctgaaattttgtagtgttttgttcccag---------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|122690456|gb|EC953000.1|EC953000EST: GGAACTATGCAAAG AGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAG
genomic: GGAACTATGCAAAGgttgatgtct ... ttttctgcagAGAAATAAAGCTCCAAATGAGCAAGCAATTCCACTACTTATGCCTCAGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATATCCTCGTATGCCATGGCATGACGTCCATTGTGCCCTATGGGGACCGCCTTGTCGTGATGTAGCTAGGCACTTTGTTCAGCGTTGGAACTATGCAAAGgttgatgtcttcactacatactccctagttcttctttcaaaagtataataaaccttttatctcaatacaagcatacttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG