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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATTCAATCATATCACATGGAAGCTTCTTAAACAATTGCTTCATAGAGCACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttctataaattccatcaatatgattgtaaatgaacccatcactctgctgcataaaatgatacaaatttgaagtctgcattgtgcttttatgtgattctgttgtgctctaaatcaatcaaggtatgagtacccttatgagggcctaatgcttgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g02880.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA07G38820.2 (Glycine max), 5'ss of exon 12
TGATTCAATCATATCACATGGAAGCTTCTTAAACAATTGCTTCATAGAGCACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttctataaattccatcaatatgattgtaaatgaacccatcactctgctgcataaaatgatacaaatttgaagtctgcattgtgcttttatgtgattctgttgtgctctaaatcaatcaaggtatgagtacccttatgagggcctaatgcttgcag
||||||||| |||||||||||||||||||| || |||| ||||||||||||||||||||| || ||||| ||| |  ||||||| ||| |||||||||||||||| |  |  ||||||| || ||  |   |  ||           | || || |   | |  ||  | ||| |  ||     |   |||||  |   ||||||| |  |   ||| |                                         
TGATTCAATTATATCACATGGAAGCTTCTTGAATAATTCCTTCATAGAGCACAGTGTTGTTGGAATCAGATCCAGAATAAACTCAAATATTCACTTAAAGgtttggtgaaccaattccacca-tacaaccatgtata----------tttgatgga--gattactattatttttagttcc----taaactttttaggacttctgtttt--tagtaatta-----------------------------------------

upper sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA17G01900.1 (Glycine max), 5'ss of exon 12
TGATTCAATCATATCACATGGAAGCTTCTTAAACAATTGCTTCATAGAGCACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttctataaattccatcaatatgattgtaaatgaacccatcactctgctgcataaaatgatacaaatttgaagtctgcattgtgct-tttatgtgattctgttgtgctctaaatcaatcaaggtatgagtacccttatgagggcctaatgcttgcag
||||||||||||||| |||||||||||||| || |||| |||||||||||| || ||||| || ||||| ||| |  ||||||| |||||||| ||||||||||| | ||  ||||| | || | | |   |  ||      ||||         | |     |||   |  |||  | ||   ||| |  | |||    ||  |||   |                                                  
TGATTCAATCATATCTCATGGAAGCTTCTTGAATAATTCCTTCATAGAGCATAGCGTTGTTGGAATCAGATCCAGAATAAACTCAAATGTTCATTTAAAGgtttgctgtaccaattctacca-tctaagcatgtatattattatca---------acagtgccatatttacctga--tttgttgtgtaccatgtatcaagttaggttaaaca-------------------------------------------------

upper sequence: Vv05s0020g02880.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G19220.1 (Arabidopsis thaliana), 5'ss of exon 12
TGATTCAATCATATCACATGGAAGCTTCTTAAACAATTGCTTCATAGAGCACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttctataaat-tccatcaatatgattgtaaatgaacccatcactctg-ctgcataaaatgatacaaatttgaagtctgcattgtgcttttatgtgattctgttgtgctctaaatcaatcaaggtatgagtacccttatgagggcctaatgcttgcag
 ||||||||||| || |||||||||||||||| ||| ||||| || ||||| ||  |||| || || || ||  | |||  |   |||||||| || |||||  |    |  | | ||  || | || ||  | || | ||    | ||  | ||| || |     || || | || |   |  |                                                                             
CGATTCAATCATTTCTCATGGAAGCTTCTTAACCAACTGCTTGATTGAGCATAGCATTGTGGGAATTAGATCAAGAGTAGGCAGTAATGTTCAGTTGAAGgtaggcaaaacgagtatctttctaaatcataatgaaaggactagactctaagactgtatgatgatctaaaattatggaaattctag----------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351029658|gb|FQ427498.1|FQ427498
EST:     ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG                         GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: gi|351040871|gb|FQ438415.1|FQ438415
EST:     ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG                         GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: gi|351019209|gb|FQ429369.1|FQ429369
EST:     ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG                         GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: gi|351025236|gb|FQ433653.1|FQ433653
EST:     ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG                         GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: gi|351013646|gb|FQ429787.1|FQ429787
EST:     ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG                         GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: gi|351015482|gb|FQ447311.1|FQ447311
EST:     ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG                         GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: gi|351034082|gb|FQ448000.1|FQ448000
EST:     ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG                         GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
EST: gi|351013342|gb|FQ425047.1|FQ425047
EST:     ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAG                         GATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA
genomic: ACAGTGTTGTCGGTATCAGGTCCCGTGTAAACTCCAATGTTCACTTAAAGgtttgttcta ... atgcttgcagGATACTGTGATGCTTGGTGCTGACTACTATGAAACCGACTCTGAAGTGGCA