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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgtaaattgatttttcattcccagctgatgtagacagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00560.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00560.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G38860.1 (Glycine max), 5'ss of exon 5
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattc------ccagctgatgtagacagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag
| ||| || ||||||| |||||   |||| | || |||||||||||||| ||  | || | |||||  |||||||||||||| |||||||||||||| |||| ||||| ||| |   ||       |||  | |   ||| | | || |  ||| | |||||     ||  || | ||| ||  || |||| | |||
GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctctgttttgaatgccatttcaatcagatatataaaaaatatctcgatgcctgccaacatt-tgaatctttgttgtactgtacag

upper sequence: Vv05s0020g00560.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G28920.1 (Glycine max), 5'ss of exon 6
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattcccagctgatgt-------agacagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag
| ||| || ||||||| |||||   |||| | || |||||||||||||| ||  | ||   |||||  |||||||||||||| |||||||||||||| |||| ||||| ||| ||  ||      ||   |       ||| |   || |  ||| |  ||||     || ||| | ||| ||   | |||| | |||
GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCACTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctttgtttttgaatgccatttcaatcagataattaaaaaatatgtcaatgcctgccaacttt-tgaatctttgctgtactgtacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110372279|gb|EC936432.1|EC936432
EST:     TGGAATCTG-TGAAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAG                         ATTCATTGATGTTGTGCAAGGTCAAAAACTTCATTTGTGGAGAAGTGAATC
genomic: TGGAATCTGTTG-AAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgtaaattgat ... tactatgcagATTCATTGATGTTGTGCAAGGTCAAAAACTTCATTTGTGGAGAAGTGAATC