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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgtaaattgatttttcattcccagctgatgtagatagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00030.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G38860.1 (Glycine max), 5'ss of exon 5
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattc------ccagctgatgtagatagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag
| ||| || ||||||| |||||   |||| | || |||||||||||||| ||  | || | |||||  |||||||||||||| |||||||||||||| |||| ||||| ||| |   ||       |||  | |   ||||| | || |  ||| | |||||     ||  || | ||| ||  || |||| | |||
GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctctgttttgaatgccatttcaatcagatatataaaaaatatctcgatgcctgccaacatt-tgaatctttgttgtactgtacag

upper sequence: Vv05s0020g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G28920.1 (Glycine max), 5'ss of exon 6
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattcccagctgatgt-------agatagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag
| ||| || ||||||| |||||   |||| | || |||||||||||||| ||  | ||   |||||  |||||||||||||| |||||||||||||| |||| ||||| ||| ||  ||      ||   |       |||||   || |  ||| |  ||||     || ||| | ||| ||   | |||| | |||
GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCACTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctttgtttttgaatgccatttcaatcagataattaaaaaatatgtcaatgcctgccaacttt-tgaatctttgctgtactgtacag