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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgtaaattgatttttcattcccagctgatgtagatagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag

Basic information

species Vitis vinifera
transcript Vv05s0020g00030.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv05s0020g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G38860.1 (Glycine max), 5'ss of exon 5
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattc------ccagctgatgtagatagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag
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GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCGCTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctctgttttgaatgccatttcaatcagatatataaaaaatatctcgatgcctgccaacatt-tgaatctttgttgtactgtacag

upper sequence: Vv05s0020g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G28920.1 (Glycine max), 5'ss of exon 6
GGATACTGACTAGTGCATTTGATGGAAGCTTGTACACTTGTATGCATCTCTTGGAATCTGTTGAAAAGCTTGTAGTTGGAACAGGAAATGGTTCTCTCAGgt-aaattgatttttcattcccagctgatgt-------agatagaaaatatctatttagatgcacttgaattttctaaattttcattatactatgcag
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GAATATTGTCTAGTGCTTTTGACTCAAGCCTTTATACTTGTATGCATCTATTAAACTCCACTGAAACTCTTGTAGTTGGAACTGGAAATGGTTCTCTGAGgtgaaattaattctttgtttttgaatgccatttcaatcagataattaaaaaatatgtcaatgcctgccaacttt-tgaatctttgctgtactgtacag