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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatttgtgtaattttttaaggaagattgaggtagtaaaacaagtactggataaattttagaataatcctggtgtttatttttctctcag

Basic information

species Vitis vinifera
transcript Vv04s0044g01840.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30131007|gb|CB916346.1|CB916346
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|56409766|gb|CX018018.1|CX018018
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|110703600|gb|EE080590.1|EE080590
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCCTTCA-GAATCGACCCACACCAGACATCAGCTGTGGT
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACC-TTCAAGAATCGACCCACACCAGACATCAGCTGTGGT
EST: gi|351041413|gb|FQ447540.1|FQ447540
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|110374828|gb|EC939763.1|EC939763
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|110691152|gb|EE068926.1|EE068926
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|110711713|gb|EE088506.1|EE088506
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|34363693|gb|CF405278.1|CF405278
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACCCCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|56409464|gb|CX017716.1|CX017716
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|56409535|gb|CX017787.1|CX017787
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|46911394|gb|CN546769.1|CN546769
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|352794399|gb|FQ481630.1|FQ481630
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGTGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
EST: gi|30302776|gb|CB979570.1|CB979570
EST:     GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAG                         GTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG
genomic: GGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatt ... tttctctcagGTTGTCAGTTTACCTTCAAGAATCGACCCACACCAGACATCAGCTGTGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGAGGGTTCAATCAGATCCAGCAGGGCGGTTAGTTATAACCGGGGAACCAGAGCATCCTGATAATCCTTGGGGCGTCACGCCATTTAAAAAGgtgcattatttgtgtaattttttaaggaagattgaggtagtaaaacaagtactggataaattttagaataatcctggtgtttatttttctctcag

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