Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaatatactaatatattacagcttgtaggtttaagcttctttctatattgagtttgttcctcaattgatcctgaactgatcaagacatgaacttgtggtag

Basic information

species Vitis vinifera
transcript Vv04s0044g01210.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os11g10420.2 (Oryza sativa), 5'ss of exon 11
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaatatactaatatattacagcttgtaggtttaagcttctttctatattgagtttgttcctcaattgatcctgaactgatcaagacatgaacttgtggtag
 |||||||| ||||||||||||||||| ||||| |||||||| ||||| || || |||||||| ||||||||||||||| | ||  |||| |||||||| |||| ||  ||     ||  | |||  |  ||   |    ||   || |||| ||  |     | ||  |  ||    || || |  |              
GCATATAATTCATATTGATTTTGGCTTTATGCTTTCCAACTCTCCTGGAGGGGTTAATTTTGAAAGTGCACCATTTAAACTGACAAGGGAGCTTCTTGAAgtaagatggtagc---ttgtaacttaaactttatggtagattaaaatgttgaatt-ataataaattttgttgtggg--gaccatggtag-------------

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G16620.1 (Glycine max), 5'ss of exon 14
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaata-----------tactaatatattacagcttgtaggtttaagcttctttct------atattgagtttgttcctca-attgatcctgaactgatcaagacatgaacttgtggtag
|||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||| || |||||||| || |||||||||||||||| |           ||||  | ||||| |      |  || ||  |||  | |      |||||   |||  ||   | | |||||   |  | |  |  |  |||  ||||  |||
TCATATCATACATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaactcagattatttacttttttattatactgcccatattcaaaattccattttaatagatattagatttcctctatacaatgatcacaagttcacaacaatgtga--ttgtactag

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G39150.1 (Glycine max), 5'ss of exon 13
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaatatactaatatattacagcttgtaggtttaagcttctttcta--tattgagtttgttcctcaattgatcc--tgaactgatcaagaca-tgaacttgtggtag
 ||||| |||||||||||||||||||||||||| || || |||||||||||||| |||||||| |||||||| || |||||||| || || ||||||||||||| ||    |||  |||  | |   |  ||| ||  ||    |    ||| ||     | ||   ||    |  |  | | |   | | | ||   | |||  ||
CCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCTGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACCCGAGAGCTTCTTGAGgtaaaattgagatagtttatcggtaccatttttgagtatccagttgatcatttagacatctactagcttttctcaatacaataacggaaataatgtgatcgtgccag

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA06G15820.1 (Glycine max), 5'ss of exon 13
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaatatactaatatatta-cagcttgtaggtttaagc-ttctttctat-attgagtttgttcctcaattgatcctgaac--tgatcaagaca-tgaacttgtggtag
 ||||| |||||||||||||||||||||||||| || || ||||| |||||||| |||||||| |||||||| || |||||||| || |||||||||||||||| ||    | |  ||| | |    ||  ||| ||  | | ||| || ||| ||    || ||   ||    ||| ||  | |   | | | ||   |||||  ||
CCATATTATACATATTGATTTTGGCTTCATGCTTTCTAATTCACCCGGTGGTGTTAATTTTGAAAGTGCACCTTTCAAATTAACCCGAGAACTTCTTGAGgtaaaattgagacagtttatcggtacctatttttgagtgtccattcgatcatttagacatttactagcttttctctgtacaataacagaaataatgtgattgtgccag

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G32460.1 (Glycine max), 5'ss of exon 12
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaa----tatacta------atatattacagcttgtaggtttaagcttctttct------atattgagtttgttcctca-attgatcctgaactgatcaagacatgaacttgtggtag
|||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| || ||||| |||||||| || |||||||| || ||||||||||||||||    || | ||       | | ||| ||     |  || ||   |   | |      |||||   ||   ||   | | |||||   | || |  |  |  |||  ||||| |||
TCATATCATTCATATCGATTTTGGCTTCATGCTTTCCAATTCACCTGGTGGTGTTAACTTTGAAAGTGCACCTTTCAAATTAACACGTGAACTTCTTGAGgtaaaacttagattatttgctttttgttatagtgcccatattcaaatgttcatttgattagatattagattccctctatacaatgatcacaagctcacaacaatctga--ttgtgctag

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S113_110V6.1 (Physcomitrella patens), 5'ss of exon 12
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaatatactaatatattacagctt--gtaggtttaa----gcttctttctatattgagtttgttcctcaattgatcctgaa---ctgatcaagacatgaacttgtggtag-----
||| || || || || || ||||| || ||||||||||| || ||||||||||| || ||||| ||||| || || ||| | || || || |||||||||||||  |    | | |  |||   |  ||   ||  |    |    ||||| |||||   ||        ||||| | ||     ||||             | ||   |      
TCACATCATTCACATCGACTTTGGTTTTATGCTCTCCAATTCTCCTGGTGGTGTCAACTTTGAAAGTGCTCCTTTCAAACTTACGCGCGAGCTTCTTGAGgtaaccttagtaaacacaacaatctcagtcaattctacagtggccgtttctgtattgcaattaaggactgattgaacatggggacctgactctttgtccggatcgtttcaaactag

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S263_81V6.1 (Physcomitrella patens), 5'ss of exon 12
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaatat----actaatatattacagcttgtaggtttaagcttctttctatattg-----agtttgttcctcaattgatcctgaactgatcaagacatgaacttgtggtag
 || || || |||||||| ||||| |  ||||||||||| || |||||||||||||||||||| ||||| || || ||| | || || || |||||||||||||  |    |  || |  |    |  ||  |  |    ||   || | ||||        ||  ||| |||   |   |||| || |       ||     |   |   
ACACATTATCCATATTGACTTTGGTTATATGCTCTCCAATTCTCCTGGTGGTGTGAATTTTGAAAGTGCTCCTTTCAAACTTACACGCGAGCTTCTTGAGgtaacttttgaaacaaaacttctgggtgtgctgtatagtactcgcttgtgtattacaagtgattgattcatcataggggtctgaccttactggattatttcaatccag---

upper sequence: Vv04s0044g01210.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: EFJ26597 (Selaginella moellendorffii), 5'ss of exon 12
TCATATAATACATATTGATTTTGGCTTCATGCTCTCCAACTCACCTGGTGGTGTGAATTTTGAGAGTGCACCATTTAAATTAACTCGGGAACTTCTTGAGgtaatatactaatatattacagcttgtaggtttaagcttctttctatattgagtttgttcctcaattgatcctgaactgatcaagacatgaacttgtggtag
        | ||||||||||| || |||||||| || || || |||||||| || || |||||||  || || |||||||| ||||||||||   | |||| ||  |     |    | | | ||| |   ||  |||| |       ||||   | ||  || |||||                                 
------CGTCCATATTGATTTCGGTTTCATGCTGTCTAATTCTCCTGGTGGAGTTAACTTTGAGAACGCCCCTTTTAAATTGACTCGGGAACAATTAGAGGCAA-GTgtcgctg--ctgctg-ttgcacacttgcgcttgtac-----ttgaacgtctttttccattgacag------------------------------