Sequence
atgc intronic sequence ATGC exonic sequenceGTCCATTATCCAATGGAGTTATTTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAGgttagtcaaacaaatgtcttggattatgtggtttacttctcgtttagtttttaagagaagttcacttctaatgacttttatatccttgcaaattttttatcttgcttttttatttttccatttctttatatttggttaatggtaaaactggtttctgctcacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G01920.1 (Arabidopsis thaliana), 5'ss of exon 12
----------------------------GTCCATTATCCAATGGAGTTATTTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAGgttagtcaaacaaatgtcttggattatgtggttt--acttctcgtt-tag--tttttaagagaagttcacttctaatgacttttatatccttgcaaattttttatcttgcttttttatttttccatttctttatatttggttaatggtaaaactggtttctgctcacag
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TGTTACGTTTAACAATGGATTTATTCAGGTACATTATCCTGTTGAGGCAATTCCGAGTATCCCTTTTTCTGATTCCAAGGGGCAGCTGCTTGAAGCTCAGgttagcagtacaagtct-tcgcactatcttacccgaagttttgattatagaccctataagacaatgtagctctttaatacatttatttccatgtaatatgtaactgtcgaactctaaaaa----atatcattgcag---------------------------------
upper sequence: Vv04s0043g00790.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G01920.2 (Arabidopsis thaliana), 5'ss of exon 12
GTCCATTATCCAATGGAGTTATTTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAGgttagtcaaacaaatgtcttggattatgtggttt--acttctcgtt-tag--tttttaagagaagttcacttctaatgacttttatatccttgcaaattttttatcttgcttttttatttttccatttctttatatttggttaatggtaaaactggtttctgctcacag
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GTACATTATCCTGTTGAGGCAATTCCGAGTATCCCTTTTTCTGATTCCAAGGGGCAGCTGCTTGAAGCTCAGgttagcagtacaagtct-tcgcactatcttacccgaagttttgattatagaccctataagacaatgtagctctttaatacatttatttccatgtaatatgtaactgtcgaactctaaaaa----atatcattgcag---------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|34542617|gb|CF510849.1|CF510849EST: TTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAG AAGGCTGAAATGAGGTGTCTTTTACATAAAACTCTGCTAGATC
genomic: TTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAGgttagtcaaa ... ctgctcacagAAGGCTGAAATGAGGTGTCTTTTACATAAAACTCTGCTAGATC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCATTATCCAATGGAGTTATTTAAGAATGTCCCTTTTTCTGAATCCAAAGGACAGCTTCTTGAAGCACAGgttagtcaaacaaatgtcttggattatgtggtttacttctcgtttagtttttaagagaagttcacttctaatgacttttatatccttgcaaattttttatcttgcttttttatttttccatttctttatatttggttaatggtaaaactggtttctgctcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC