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GTTCTCAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgagctttttctcttgttcatttaatttgctagtagcttattgggcttctttagttccaagggaggggtaaatttcagcatagatcctcaggaa...
species | Vitis vinifera |
transcript | Vv04s0023g01300.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: CAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTG GGAC-CACAACT-GACATTCTTGCCCGTGTCCCATTGGGGAAAGAGGGCCTEST: gi|33401954|gb|CF207581.1|CF207581
genomic: CAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgag ... atttttacagG-ACACACA-CTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCT
EST: GGTCATATCGGTTTGGGTAATGCTCGATTTCCTAGTGGAACCGCTG GACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTGEST: gi|29782363|gb|CB347609.2|CB347609
genomic: GGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgag ... atttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTG
EST: TGGGTAATGCTCGATTTCCTAGTGGAGATC-CTG GACACACACTTGANAATCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTEST: gi|110694334|gb|EE071348.1|EE071348
genomic: TGGGTAATGCTCGATTTCCTAGTGGA-ACCGCTGgtatgatgag ... atttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTT
EST: CAAGGGTCATATCGGTTTGGGTAATGCTCGATTTCCTAGTGGAACCGCTG GACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTGEST: gi|110700420|gb|EE078440.1|EE078440
genomic: CAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgag ... atttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTG
EST: CAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTG GACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTGEST: gi|30299030|gb|CB975824.1|CB975824
genomic: CAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgag ... atttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTG
EST: CAAGGGTCATATCGGTTTGGGTAATGCTCGATTTCCTAGTGGAACCGCTG GACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTGEST: gi|110379199|gb|EC944379.1|EC944379
genomic: CAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgag ... atttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTG
EST: ATATCGGTTTGGGTAATGCTCGATTTCCTAGTGGAACCGCTG GACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTGEST: gi|29782317|gb|CB347526.2|CB347526
genomic: ATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgag ... atttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTG
EST: TGGGTAATGCTCGATTTCCTAGTGGAACCGCTG GACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTGEST: gi|110712732|gb|EE088034.1|EE088034
genomic: TGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgag ... atttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTG
EST: CAAGGGTCATATCAGTCTGGGTAATGCTCGAATTCCTAGTGGAACCGCTG GACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGA-GGCCTTG
genomic: CAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgag ... atttttacagGACACACACTTGACATTCTTGCTCGTGTCCCATTGTGGAAGGATGGCCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTCAAGGGTCATATCAGTCTGGGTAATGCTCGATTTCCTAGTGGAACCGCTGgtatgatgagctttttctcttgttcatttaatttgctagtagcttattgggcttctttagttccaagggaggggtaaatttcagcatagatcctcaggaa
- - - - - - - - - - - - - - - - - - - - - AGTGGA
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