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AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAATCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGTgtaaggactaatgcattgaagtgatcatatttcataccaacaggaattttctcgtcttgtattttaagtttccatgaagtttgaatgttctctttattgtatgggcag
species | Vitis vinifera |
transcript | Vv04s0023g01040.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGT GGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGEST: gi|110715090|gb|EE092739.1|EE092739
genomic: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGTgtaaggacta ... gtatgggcagGGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAG
EST: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGT GGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGEST: gi|110397911|gb|EC963898.1|EC963898
genomic: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGTgtaaggacta ... gtatgggcagGGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAG
EST: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGT GGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAGEST: gi|110731744|gb|EE106423.1|EE106423
genomic: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGTgtaaggacta ... gtatgggcagGGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAG
EST: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGT GGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAG
genomic: TCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGTgtaaggacta ... gtatgggcagGGACATCACCTCTTGCCCGAGACTAGAGGACTCTGCCTCTCCGAAGAACAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTTTATGAGGGTTTGAATATGAAAGTGGAGCAGCAAATCCCTCTTCTCTTGGTTGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAGTgtaaggactaatgcattgaagtgatcatatttcataccaacaggaattttctcgtcttgtattttaagtttccatgaagtttgaatgttctctttattgtatgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA