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ATTTGACAGCCTCTCTGCAAAAGATAAGTGTGGAAAGGATTGGTCATTTATACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCAAAGTTCAGgtaatgctctctcaacttttcttatcagcattgaactttatgcttatattttttatttttttttataggaaacgacaaaggaaaatattgatagaaaaat...
species | Vitis vinifera |
transcript | Vv04s0008g06040.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCAAAGTTCAG AGTGAGAATATGACAAATAAGTGGCATGTGTACATGACCAAGGACGGGAGGEST: gi|30329340|gb|CD012602.1|CD012602
genomic: TACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCAAAGTTCAGgtaatgctct ... gtccaatcagAGTGAGAATATGACAAATAAGTGGCATGTGTACATGACCAAGGACGGGAGG
EST: TACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCAAAGTTCAG AGTGAGAATATGACAAATAAGTGGCATGTGTACATGACCAAGGACGGGAGGEST: gi|29785081|gb|CB341792.2|CB341792
genomic: TACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCAAAGTTCAGgtaatgctct ... gtccaatcagAGTGAGAATATGACAAATAAGTGGCATGTGTACATGACCAAGGACGGGAGG
EST: TACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCGAAGTTCAG AGTGAGAATATGACAAATAAGTGGCATGTGTACATGACCAAGGACGGGAGGEST: gi|27583039|gb|CB005734.1|CB005734
genomic: TACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCAAAGTTCAGgtaatgctct ... gtccaatcagAGTGAGAATATGACAAATAAGTGGCATGTGTACATGACCAAGGACGGGAGG
EST: ACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGNCAA-GTTCAG AGTGAGAATATGACAAATAAGTGGCATGTGTACAT
genomic: ACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAG-CAAAGTTCAGgtaatgctct ... gtccaatcagAGTGAGAATATGACAAATAAGTGGCATGTGTACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTTGACAGCCTCTCTGCAAAAGATAAGTGTGGAAAGGATTGGTCATTTATACTAAAGCAGATTGGCATGTTCTCATTCACAGGGCTGAGCAAAGTTCAGgtaatgctctctcaacttttcttatcagcattgaactttatgcttatattttttatttttttttataggaaacgacaaaggaaaatattgatagaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa