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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGTGAGCGATACTCTTATGCACGGCGATACAGGACTCCATCTCCAGATCGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAGgtaatgaagcaacctacttacgtgagttttttcagtcatttgagtgaatgattttatactgtagtagtttatggtgcatatttgttctttgttgctag

Basic information

species Vitis vinifera
transcript Vv04s0008g05090.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30297103|gb|CB973897.1|CB973897
EST:     CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAG                         ATATCCATACAGGCGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
genomic: CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAGgtaatgaagc ... ttgttgctagATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
EST: gi|352777330|gb|FQ473964.1|FQ473964
EST:     CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAG                         ATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
genomic: CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAGgtaatgaagc ... ttgttgctagATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
EST: gi|110699467|gb|EE076501.1|EE076501
EST:     CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAG                         ATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
genomic: CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAGgtaatgaagc ... ttgttgctagATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
EST: gi|26259583|gb|CA810646.1|CA810646
EST:     CGTTCTCCAGTAC-GTCATATCGTTATAATAACAGAATTGACCGTGACAG                         ATATCCATACAGGCGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
genomic: CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAGgtaatgaagc ... ttgttgctagATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
EST: gi|30322280|gb|CD005542.1|CD005542
EST:     CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAG                         ATATCCATACAGGCGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
genomic: CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAGgtaatgaagc ... ttgttgctagATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
EST: gi|22009451|gb|BQ794485.1|BQ794485
EST:     CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAG                         ATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC
genomic: CGTTCTCCAGTACGGTCATATCGTTATAATAACAGAATTGACCGTGACAGgtaatgaagc ... ttgttgctagATATCCATACAGGAGGTATGATCGATCACCCAGGCGTTATAGAAGCCCACC