1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATTGATGGTGAAACTTCCACTCTTGCTGACATGAATATATTTCCTGGAGATCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAGgtaagttattgctacatacttgaatgaactgttggggatatttgtttctttggaaatatttaatgagtcctaggagggctttggggaattcacatggttt...
species | Vitis vinifera |
transcript | Vv04s0008g03170.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAG ATGAGCTCTCTGACCATAAAATGGAGGTGCAACAGGCTGAGGAAGGGTTCCEST: gi|30135690|gb|CB921028.1|CB921028
genomic: TCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAGgtaagttatt ... tgttccacagATGAGCTCTCTGACCATAAAATGGAGGTGCAACAGGCTGAGGAAGGGTTCC
EST: TCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCNGGATATTGCAG ATGAGCTCTCTGACCATAAEST: gi|110396979|gb|EC962688.1|EC962688
genomic: TCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAGgtaagttatt ... tgttccacagATGAGCTCTCTGACCATAA
EST: TCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAG ATGAGCTCTCTGACCATAAAATGGAGGTGCAACAGGCTGAGGAAGGGTTCCEST: gi|33407921|gb|CF213548.1|CF213548
genomic: TCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAGgtaagttatt ... tgttccacagATGAGCTCTCTGACCATAAAATGGAGGTGCAACAGGCTGAGGAAGGGTTCC
EST: TCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAG ATGAGCTCTCTGACCATAAAATGGAGGTGCAACAGGCTGAGGAAGGGTTCC
genomic: TCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAGgtaagttatt ... tgttccacagATGAGCTCTCTGACCATAAAATGGAGGTGCAACAGGCTGAGGAAGGGTTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGATGGTGAAACTTCCACTCTTGCTGACATGAATATATTTCCTGGAGATCTTCTTTGGGTGAAAGATTCAGAGATCCATGAGTATCGGGATATTGCAGgtaagttattgctacatacttgaatgaactgttggggatatttgtttctttggaaatatttaatgagtcctaggagggctttggggaattcacatggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggaat