Sequence
atgc intronic sequence ATGC exonic sequenceTCCAACACGGCCAAATCCAGGACGCGAAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGgtattactggtcaatacagtattttaatgtcgactttctctatttcatcatgactagaatctactagattttgcctggtagatgtgttgtgctttccttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA15G36890.1 (Glycine max), 5'ss of exon 12
TCCAACACGGCCAAATCCAGGACGCGAAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGgtattactggtcaatacagtattttaatgtcgactt-tctctatttcatcatgactagaatctactagattt---tgcctgg--tagatgtgttgtgctttccttt-------------------------------------------------------------------------
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CCCCACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGgtattatataacactgttataccatgttaactatttgtgaccattttgt-gttttcaggaacaactggatctagatgtttgactttgatattgaaaacttactttgattgaatgattttgtttcttcactatatcagttttaagcatttcagcttgtgtacactttctttgtttgctag
upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA13G26170.1 (Glycine max), 5'ss of exon 12
TCCAACACGGCCAAATCCAGGACGCGAAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGgtattactggtcaatacagtattttaatgtcgactttctctatttcatcatgactagaatctactagattttgcctggtagatgtgttgtgctttccttt-
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CCCAACAAAGCCAAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATTTTTTTTGGCAAGgtattgcataacactgttatgccatattaaaactagggttaatttgataactatctttaccttttat-ttttgtggattcaaaggaaaccactttttgtgt
upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G36700.2 (Glycine max), 5'ss of exon 12
TCCAACACGGCCAAATCCAGGACGCGAAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGgtattactggtcaatacagtattttaatgtcgactttctctatttcatcatgactagaatctactagattttgcctggtagatgtgttgtgctttccttt-
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CCCAACAAAGCCCAATCCAGGAGGTGGAGGGGAAACATGTGCAGAAACTGGGATCAACATTTTTTTTGGCAAGgtattgcataacactgttatgccatattaaaactatggttaatttgataactatctttaccttttat-ttttgtggattcaaaggaaaccactttttgtgt
upper sequence: Vv04s0008g02780.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT3G12280.2 (Arabidopsis thaliana), 5'ss of exon 12
TCCAACACGGCCAAATCCAGGACGCGAAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGgtattactggtcaatacagtattttaatgtcgactttctctatttcatcatg-actagaatctactagatt------------ttgcctggtagatgtgt----tgtgctttccttt-----
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CCCAACACGGCCCAACCCAGGAGGTGGAGGAGAAACTTGTGCAGAAACTGGAATCAATATTTTCTTCACAAAGgtaggtctgtgagatctttggatctactactaatcgtttg-gttagatgatgtactacaaaacacggtattgattcttcattttcggctgggaattgtgttaaatgtggtggctcttcccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110710388|gb|EE086681.1|EE086681EST: AAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAG ATAATAAAGTTAGCTGCTGTCAGAATCAATGGTATGGTTGAGAGGCTACAA
genomic: AAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGgtattactgg ... tgctacctagATAATAAAGTTAGCTGCTGTCAGAATTAATGGTATGGTTGAGAGGCTACAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCAACACGGCCAAATCCAGGACGCGAAGGGGAAACATGTGCAGAAACTGGCATCAATATATTCTTTAGCAAGgtattactggtcaatacagtattttaatgtcgactttctctatttcatcatgactagaatctactagattttgcctggtagatgtgttgtgctttccttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG