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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGTGTGGCTTCTTGTTCAAACTTATGGGCCCTAATTATGGATGCTGGCACAGGCTTCAGTGCTCAAGTTTATGAACTCTCTCCTTATTTCCTTCACAAGgttgcttatattccttaacaggcattgcatgttagcacttcattgaacagtatgcatgtcacaaactggcacgtaaattgtgttgaaaacaagttaatactgtatttttgtctttgctgaag

Basic information

species Vitis vinifera
transcript Vv04s0008g00160.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os05g11140.2 (Oryza sativa), 5'ss of exon 12
TAGTGTGGCTTCTTGTTCAAACTTATGGGCCCTAATTATGGATGCTGGCACAGGCTTCAGTGCTCAAGTTTATGAACTCTCTCCTTATTTCCTTCACAAGgt---tgcttatattcctta-acaggca-----------ttgcatgttagcac--------ttcattgaacagtatgcatgtcacaaactggcacgtaaattgtgttgaaaacaagttaatactgtatttttgt-ctttgctgaag---------------------------------
|   |||||||||||||||||  | |||||  |||| |||||||||||||| || || | | ||||||| ||||| || ||||   |||| |||||||||||   |  ||| | |  ||| |   | |            |||||| |   |         | ||| |     |||  || | |||   |      | |||  |    ||      || | |  || |     | || || |  |                                  
TTCAGTGGCTTCTTGTTCAAATCTGTGGGCTTTAATAATGGATGCTGGCACTGGATTTACTTCTCAAGTATATGAGCTTTCTCAACATTTTCTTCACAAGgtgagtaattaaaattattatagtagtactctttgtttcctgcatgctcctatccttctcatccatcggtggctatcaatattacagcttacactctcaataatagctaagtgtgatttacatggtttcacactgctatgttccaattgttttgatatgctcgcctatgatgctcttag

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g54100.1 (Oryza sativa), 5'ss of exon 12
TAGTGTGGCTTCTTGTTCAAACTTATGGGCCCTAATTATGGATGCTGGCACAGGCTTCAGTGCTCAAGTTTATGAACTCTCTCCTTATTTCCTTCACAAG-
| |  |  | ||||| |||||  | ||||| ||||| |||||||||||||| || |||| | | || ||||||||||| || ||  |||| |||||||||    || ||||     ||  ||||| ||      || ||||||    | | |      |        |||| |  ||  |||        |||| |  |    ||| | | || |  |  |||| |  |   | ||||
TTGCATAACATCTTGCTCAAATCTGTGGGCTCTAATCATGGATGCTGGCACTGGGTTCACTTCCCAGGTTTATGAACTTTCACCACATTTTCTTCACAAGgtgagtagcttgctccttgtttaactggtggaaaatcttagcaaactaatcacataacttttcaaggcaaagttacatataaggaagctcttgtatacattgtcaaatgtgattccatggttttctggtcatttgaag

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G116151_T03 (Zea mays), 5'ss of exon 12
TAGTGTGGCTTCTTGTTCAAACTTATGGGCCCTAATTATGGATGCTGGCACAGGCTTCAGTGCTCAAGTTTATGAACTCTCTCCTTATTTCCTTCACAAGgttgcttatattccttaacaggcattgcatgttagcacttcattgaacagtatgcatgtcacaaactggcacgtaaattgtgttgaaaacaagttaatactgtatttttgtctttgctgaag
    || || |||||||||||  | |||||  | || |||||||||||||| || || | | ||||||| |||||||| ||||| ||||| |||||||||||    |||     | ||    |  |   | || | | |  |     || | | || |||||    |      |   ||||| |     |   | || | | ||  |     || ||     
CTCCGTTGCCTCTTGTTCAAATCTGTGGGCTTTGATAATGGATGCTGGCACCGGATTTACTTCTCAAGTGTATGAACTGTCTCCATATTTTCTTCACAAGgtaagctat-----taaatgccccct---ttttggtattcta----gcaatct-cacgtcact--tttatttatttgttgtgctccctccttttcaa-attatagctc-actttggc-----

upper sequence: Vv04s0008g00160.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 5'ss of exon 12
TAGTGTGGCTTCTTGTTCAAACTTATGGGCCCTAATTATGGATGCTGGCACAGGCTTCAGTGCTCAAGTTTATGAACTCTCTCCTTATTTCCTTCACAAGgt---tgcttatattccttaacaggcattgcatgtta---gcacttcattgaacagtatgcatgtcacaaactggcacgtaaattgtgttgaaaacaagttaatactgtatttttgtctttgctgaag
 ||||||||||||||| ||||  | ||||| || ||||||||||| || ||||| || | ||||||||||||||| || || | |   ||||| ||||||||   ||  |    ||     || |  |||  |  ||   |||  |  | |  || |    ||   |||      |  || |   |   ||    ||  || |     |||||||             
CAGTGTGGCTTCTTGTACAAATCTGTGGGCTCTTATTATGGATGCGGGGACAGGATTTACTGCTCAAGTTTATGAGCTGTCACATGTATTCCTCCACAAGgtgggtgtgtggtgtctcgctcaagttttgggtagtatatgcagcttgtcgttcaatg---atagaacagctatccctgttatgcgccatgccctcacattga-gtcatatttttacag---------