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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACGGATATTTGTTCTGTTGAGACGCTGTCTTTTTGACAGTGACGATGAGgtgagttttccttttttcatgttttatgttctgaggttttggcgtattgaagtgctatgcacacaaaatgctctcttggttatttactaaggttttttaaaaggtaaattgtattgttatttaattgtttcaatgtgctctgtctttcaaattggactaagcagttttatatgctaatctgtttgcag

Basic information

species Vitis vinifera
transcript Vv03s0063g02450.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g02450.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA06G01520.1 (Glycine max), 5'ss of exon 12
CCACGGATATTTGTTCTGTTGAGACGCTGTCTTTTTGACAGTGACGATGAGgtgagttttccttttttcatgttttatgttctgaggttttggcgtattgaagtgctatgcacacaaaatgctctcttggttatttactaaggttttttaaaaggtaaattgtattgttatttaattgtttcaatgtgctctgtctttcaaattggactaagcagttttatatgctaatctgtttgcag
|| || |||||||||||| | || || ||||||||||||||||| |||||||||| |||   |   ||  | |  | | || || ||  ||    || | | |||   ||      | ||||    || ||| | |     ||||||||  |    |  | |||||                                                                         
CCCCGCATATTTGTTCTGCTAAGGCGATGTCTTTTTGACAGTGATGATGAGgtgaatttctgtaccttgttttaatgtattttgtggcatttctataattatgtggcttg------agatgca---ttagttgtgtg---gggttttttgta---catctagtatt-------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546253|gb|CF514485.1|CF514485
EST:     GTCTTTTTGA-AGTGACGATGAG                         GTTCGTGATAGGGCAACACTCTATCTGAACACACTTGGAGGTGACGGTTCT
genomic: GTCTTTTTGACAGTGACGATGAGgtgagttttc ... ctgtttgcagGTTCGTGATAGGGCAACACTCTATCTGAACACACTTGGAGGTGACGGTTCT
EST: gi|71868042|gb|DT017097.1|DT017097
EST:     CACGGATATTTGTTCTGTTGAGACGCTGTCTTTTTGACAGTGACGATGAG                         GTTCGTGATAGGGCAACACTCTATCTGAACACACTTGGAGGTGACGGTTCT
genomic: CACGGATATTTGTTCTGTTGAGACGCTGTCTTTTTGACAGTGACGATGAGgtgagttttc ... ctgtttgcagGTTCGTGATAGGGCAACACTCTATCTGAACACACTTGGAGGTGACGGTTCT