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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGTTGTTCCTCATACTCGAAATGTCCGTGGATCCAATTACTGTCTTCTGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaaatttcctttgttcatgttttagaattccttcatatttctagtatgaaaggttattaataatcctactatcactggctaaggtctcaaatccttgctgcag

Basic information

species Vitis vinifera
transcript Vv03s0063g01110.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0063g01110.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G01220.1 (Glycine max), 5'ss of exon 12
AGGAGTTGTTCCTCATACTCGAAATGTCCGTGGATCCAATTACTGTCTTCTGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaaatttcctttgttc-atgttttagaattccttcatatttctagtatgaaaggttattaataatcctactatcactggctaag-gtctcaaatccttgctgcag
 ||||   ||||||  ||||  |  ||    ||  | ||||||||| |  | ||||| ||||| || ||||| |||||| ||||||| ||  |||||||||||||||| |||||  ||| | | || | |     |    |  | | | ||  |||| |   |  || || |  |   || |||  |||||  | |  |    ||| |||||
TGGAGCCATTCCTCGAACTCACAGCGTTAAAGGGACTAATTACTGTTTAATCAATGTTTTTCCAGACCGAATTCCTGGAAGAGCAATCATTATATCTGTTgtatgttttaattttttttctcctatatatccagctgaaattgtgtattta--atgatattatgatattattgttgacatgact--ctaagtatgttgatgtgttgttgcag

upper sequence: Vv03s0063g01110.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT2G19940.2 (Arabidopsis thaliana), 5'ss of exon 12
AGGAGTTGTTCCTCATACTCGAAATGTCCGTGGATCCAATTACTGTCTTCTGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaaatttcctttgttcatgttttagaatt-ccttcatatttctagtatgaaaggttattaataatcctactatcactggctaaggtctcaaatccttgctgcag
||||||||||||||  || |  || ||  | |||||||| || |||| | ||| |||||||||||||||||| |||||| |||| || ||| | || || |||  |    ||  || |  |   |||| || | |   ||| |  |||| |  ||      || |  ||||       |   ||  ||   ||  ||              
AGGAGTTGTTCCTCGGACACACAACGTTAGAGGATCCAACTATTGTCATATGAGTGTCTTTCCTGATCGAATTCCTGGAAGAGCTATCATAATCTCAGTGgtaattaagcataaccatcctc--tgttataaactcatctttagctttcgacaatattgctttgtgtataa-------aaagctctctggtgttgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|83276518|gb|DV940526.1|DV940526
EST:     TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTT                         ATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
genomic: TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaa ... cttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
EST: gi|110390116|gb|EC955007.1|EC955007
EST:     TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTT                         ATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
genomic: TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaa ... cttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
EST: gi|30330207|gb|CD013469.1|CD013469
EST:     TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTT                         ATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
genomic: TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaa ... cttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
EST: gi|30134557|gb|CB919895.1|CB919895
EST:     TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTT                         ATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
genomic: TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaa ... cttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
EST: gi|87584416|gb|DY473601.1|DY473601
EST:     TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTT                         ATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
genomic: TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaa ... cttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
EST: gi|30329402|gb|CD012664.1|CD012664
EST:     TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTT                         ATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
genomic: TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaa ... cttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
EST: gi|30320747|gb|CD004009.1|CD004009
EST:     TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTT                         ATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
genomic: TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaa ... cttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
EST: gi|27583381|gb|CB006076.1|CB006076
EST:     TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTT                         ATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT
genomic: TGAATGTCTTTCCTGATCGAATCCCTGGACGAGCAATTATAGTATCTGTTgtatgtttaa ... cttgctgcagATTGATAATCTTGTGAAGGGAGCTTCTGGTCAAGCCTTGCAGAATCTTAAT