1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGGTGGAACACTGAAAATTGCGAGTCCTGCATCTCTATTAAAGGAAGCTATCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGgtaactatggatatggcttgttttgcccccaagacatttcattttggggattctatttggttattatttagtactggtaaattttattaagaaagaaaga...
species | Vitis vinifera |
transcript | Vv03s0038g04250.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAG GTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAAEST: gi|30304878|gb|CB981672.1|CB981672
genomic: TCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGgtaactatgg ... ttttattcagGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAA
EST: TCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAG GTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAAEST: gi|71860009|gb|DT009064.1|DT009064
genomic: TCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGgtaactatgg ... ttttattcagGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAA
EST: TCCATGTGATTAGCTGTGGTTATGAAGATAAAACAGACTGGGGAAAAGAG GTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAAEST: gi|110727924|gb|EE105243.1|EE105243
genomic: TCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGgtaactatgg ... ttttattcagGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAA
EST: TCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAG GTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAAEST: gi|33407928|gb|CF213555.1|CF213555
genomic: TCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGgtaactatgg ... ttttattcagGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAA
EST: GTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAG GTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAA
genomic: GTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGgtaactatgg ... ttttattcagGTGGGTTGGATCTATGGATCTGTTACAGAAGATATCTTGACAGGTTTTAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGTGGAACACTGAAAATTGCGAGTCCTGCATCTCTATTAAAGGAAGCTATCCATGTGATTAGCTGTGGTTATGAAGATAAAACGGACTGGGGAAAAGAGgtaactatggatatggcttgttttgcccccaagacatttcattttggggattctatttggttattatttagtactggtaaattttattaagaaagaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagaaa