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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattttatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag

Basic information

species Vitis vinifera
transcript Vv03s0038g00970.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os04g31190.1 (Oryza sativa), 5'ss of exon 11
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattttatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag
 ||||||||||  |||||||| |||||||||||  ||||||| | |||||||||||||| || || |  || || ||||| ||| |||| ||||||     || |  ||  |    || |    |  |  | || | ||   | | ||||| | |    || | || |        
TTGCCGTTTGAGATTCTTGTGCGAAGGCAAATAAGTCGTTTGCTTGATCCAAGCCTTCAATGCGCAAATTTTATCTATGACGAGCTAGTCAAGgtatgtctttgtacctctg----ttgtatcatacgaac-ctttaatcaacctgtttaagaatccctaaatcatgcag------

upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os01g69130.1 (Oryza sativa), 5'ss of exon 11
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgt-aga----aaattcttacttggcattt-tatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag------------
|| || ||||| || |||||  | ||||| ||     | ||| | ||||||||||||||||||||  | |||||||| |||||| |||| ||||| |||    | |   ||  ||| || || | ||   |||  | |   | ||    |  | || |  ||   |  || ||   ||  |             
GTACCTTTTGAGGTCCTTGTACGCAGGCAGATCAGCAGATTGCTTGATCCAAGCCTTCAGTGTGCAGGTTTCATATACGATGAGCTAGTCAAGgttagacctgacacctttttttgccacttgtctggcattgccgtatgctaatgcctag-tatatctttgtggatatgctttttcttaatatgccacttgca

upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 11
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattttatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag
||||| |||||||| |||||| ||||||||||| | ||| | || |||||||||||||| ||||| || || ||||||||||| ||| ||||||||| ||  |     |     |||        ||  |   |  | |||| |   |   |    |  || |   | | || |||
GTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGCCTTCAATGTGCCAGGTTTATATATGATGAATTAATAAAGgtaggaacatggctttaaaagtttgtcatctctgctgtcttgctttatgaagaatgtgcctaaacaaaatcccttctcttcag

upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 11
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattttatgctct-tggggcactattatatgcatctttaacactgatcaagtgattccactccag
||||| |||||||| |||||| ||||||||||| | ||| | || |||||||| ||||||||||| || || ||||| ||||| ||| ||||||||| ||  |     ||   | ||| |  ||| ||  |   |  | |||| |   |     || |  || |   | | || |||
GTGCCATTTGAAGTCCTTGTGCGAAGGCAAATATCGCGTCTATTGGATCCAAGTCTTCAGTGTGCCAGGTTTATATACGATGAATTAATAAAGgtaggaagatggc-tttaaaagtttgtcttctctgttgtcttgctttatgaacaatgtgt-ctaaaaaaatcccttctcttcag

upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 11
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattttatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag
||||| ||| |||| |||||| ||||||||||| |  || | || |||||||| ||||||||||| || || ||||||||||| ||| ||||||||| ||        |    |||||   |||| |  |   |  | |||  |   |   |    |  |  |   | | || |||
GTGCCATTTAAAGTCCTTGTGCGAAGGCAAATATCCTGTCTATTGGATCCAAGTCTTCAGTGTGCCAGGTTTATATATGATGAATTAATAAAGgtaggaacagggctttaaagattttcatctct-gttgtcttgctttatcaagtatgtgcctaaacaatatcccttctctgcag

upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA07G30150.1 (Glycine max), 5'ss of exon 11
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattt-tatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag
|| || |||||||| |||||  | ||||| ||| ||||  | || |||||||| |||||||||||||| || ||||||||||||||| | ||||||     || | |||||  |||| |      ||    ||| |   ||   || | |   |    | || |   | | || |||
GTCCCATTTGAAGTGCTTGTACGCAGGCAGATATCTCGACTATTGGATCCAAGTCTTCAGTGTGCTAGGTTTATATATGATGAGTTAATGAAGgtaagggtttatgacttgctatttctgcttctttacttcaccaccttacaaatatgtgctaa-attaaaatctcttctcttcag

upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT2G14120.3 (Arabidopsis thaliana), 5'ss of exon 12
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattttatgct-cttggggcactattatatgcatctttaacactgatcaagtgattccactccag
|| || |||||||||||||| || ||||||||| ||||||| |||||||| ||||||||||| ||||| ||||| |  |||||| ||||||||||   |  ||  |    |    |||||| | ||    |     ||| ||| | | | ||   | |       | |    | |||
GTTCCATTTGAAGTTCTTGTCAGGAGGCAAATATCTCGTTTATTAGATCCCAGCCTTCAGTGCGCTAGGTTCATCTTCGATGAGCTAGTAAAGgtgttatttttatttgcgtttctttatgatgctaactgttgatttacatg-accatgaattttaaattgaaaaattatgtacag

upper sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGCCGTTTGAAGTTCTTGTGAGAAGGCAAATAGCTCGTTTGTTAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaattcttacttggcattttatgctcttggggcactattatatgcatctttaacactgatcaagtgattccactccag
|| || |||||||||||||| || ||||| ||| |||||||||||||||| ||||||||||||||  | ||||| | ||| ||| || |||||||    | |  ||  ||||     | || | ||        || | ||   |   |||   |||       ||| | || |||
GTTCCATTTGAAGTTCTTGTTAGGAGGCAGATATCTCGTTTGTTAGATCCTAGCCTTCAGTGTGCCCGGTTCATTTTTGAAGAGCTAATAAAGgtg---agtgtttttttgg-----tttgttgttaataagtaataagattacttcataaatttga-------atttctctacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689415|gb|EC938921.1|EC938921
EST:     TAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAG                         ATAAGCCATCGCTGTCTGGTGAGTGAAATGCAGCGGTTTCCTATTCTGAGA
genomic: TAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaatt ... tccactccagATAAGCCATCGCTGTCTGGTGAGTGAAATGCAGCGGTTTCCTATTCTGAGA
EST: gi|352764636|gb|FQ469711.1|FQ469711
EST:     TAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAG                         ATAAGCCATCGCT
genomic: TAGATCCAAGCCTTCAGTGTGCTAGATTCATATATGATGAGTTAGTAAAGgtagaaaatt ... tccactccagATAAGCCATCGCT