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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAGgtaatgtctattcaactttgtaaatacatcttttgatgcttttcttgacatagagcttcttagcttacagccccttttccttatactgcag

Basic information

species Vitis vinifera
transcript Vv02s0033g01360.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G043530_T01 (Zea mays), 5'ss of exon 8
GTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAGgtaatgtctattcaactttgtaaatacatcttttgatgcttttcttgacatagagcttcttagcttacagccccttttccttatactgcag----------
|| || |||||| | || || || ||||||||| | || |||||||| ||||| |||||| | ||||| || ||||||||||||| | |  |       || ||       |   ||    ||      || |  |||  |  ||   | ||    |||     || |  |            
GTCAAAGAATCTCTGAAGTTACGGCAGATAATGAAGACCATTCTCACATTGGGGAATGCATTAAATCAAGGGACAGCACGAGgtattttagaaaggtggttttatgcttcacccctgggagttccaccaacctgaagca-caaagtcaagagtgaatttgaacaattcaccccttggagtgct

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G34830.1 (Glycine max), 5'ss of exon 12
GTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAGgtaatgtctattcaactttgtaaat---acatcttttgatgcttttc--ttgacatagagcttcttagctta--cagccccttttccttatactgcag-------------------------------
||||| ||||||| |||||||||||| |||||||| || ||||| ||  |||| |||||  ||||||| || ||| |||||||||   | |  | |||| |    ||   | ||   ||  |  ||| |  || || |     |  || ||  |    |    |||     || |||                                  
GTGAAAGAATCTGGAAAATTGCGTCAAATAATGCAGACCATTCTTACTCTGGGCAATGCCTTGAATCAAGGAACAACACGAGgtatctttttgttaactctcattatttgagatggatttgtagtttccatttcacctcaccatcattggcaaaatgggaaagtttctgcaatgctgtttaggttgaatccttttatgttgctcattgcag

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA04G14770.1 (Glycine max), 5'ss of exon 12
GTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAGgtaatgtctattcaactttgtaaatacatcttttgatgcttttcttgacatagagcttcttagcttacagc-cccttttccttatactgcag--------------------------------------------------
||||| |||||||  ||||||||||| |||||||| || ||||| ||  |||| |||||  ||||||| || |||||||| ||||   | |  | |||| |     ||| |   |  |   |    | ||  |  || |||     | ||  | || |  |    | | ||                                                     
GTGAAAGAATCTGGGAAATTGCGTCAAATAATGCAGACCATTCTTACACTGGGCAATGCCTTGAATCAAGGAACAGCACGGGgtatctttttgttaactctcattgtacttgagtgtaatttgcgatggatttgtagtttccattttcacctcaccatcattgacaaaatgagaagtttctgcaatgctgtttagattatatccttttatgttgatcattgcag

upper sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 12
GTGAAGGAATCTGTAAAATTGCGTCAGATAATGCAAACAATTCTCACGTTGGGAAATGCACTGAATCAGGGCACAGCACGAGgtaatgtctattcaactttgtaaatacatcttttgatgcttttcttgacatagagcttcttagcttacagccccttttccttatactgcag
|||||||| |||| ||| |||||||| || |||||||||||| | |||||||||||||| || |||||||| || ||  ||||||   | | |||     | |  ||      ||||||  | |         | ||| |||  ||| | |   |||||   ||  |      
GTGAAGGAGTCTGCAAAGTTGCGTCAAATTATGCAAACAATTTTAACGTTGGGAAATGCTCTAAATCAGGGAACTGCGAGAGgtatcatattttc----ctattgatttcaaatttgatattctg--------aaagcatct--gctcataatgcctttgtgttgcag-----