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GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctctctctttctctccccttcccttcccccctctccctcagccacaatacatgcttgcatgaaaattgaaggttgattatgcatcattggtcac...
species | Vitis vinifera |
transcript | Vv02s0025g03370.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG TGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGEST: gi|351026069|gb|FQ428081.1|FQ428081
genomic: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctct ... ttcttcccagTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
EST: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG TGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGEST: gi|349829212|gb|FQ419744.1|FQ419744
genomic: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctct ... ttcttcccagTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
EST: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG TGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGEST: gi|27584138|gb|CB006833.1|CB006833
genomic: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctct ... ttcttcccagTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
EST: GGAGTGGCTATCCATCAGTCTAGAGGTTCAAAAACTGGTTCAGGATCCAG TGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGEST: gi|110699701|gb|EE076931.1|EE076931
genomic: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctct ... ttcttcccagTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
EST: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG TGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGEST: gi|349817348|gb|FQ405352.1|FQ405352
genomic: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctct ... ttcttcccagTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
EST: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG TGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGEST: gi|351054267|gb|FQ450349.1|FQ450349
genomic: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctct ... ttcttcccagTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
EST: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG TGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAGEST: gi|351028430|gb|FQ427326.1|FQ427326
genomic: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctct ... ttcttcccagTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
EST: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAG TGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
genomic: GGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctct ... ttcttcccagTGATACCCATACCCCAAGGAACTTATCAAGCCCTGTTTCTCCTATTGGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATTGGACACACAAGAAATGTTTTAGAGTCTGAAGGAGTGGCTATCCATCAGTCTAGATGTTCAAAAACTGGTTCAGGATCCAGgtctctctctctctttctctccccttcccttcccccctctccctcagccacaatacatgcttgcatgaaaattgaaggttgattatgcatcattggtcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa