Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagtaatttatttggaaaataaattgcaacatggaggttttgaagtccattctggtcttgaggtatgattctgccttttatacttatcattgagcttttttatgtag

Basic information

species Vitis vinifera
transcript Vv01s0150g00030.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os09g33600.1 (Oryza sativa), 5'ss of exon 12
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagtaatttatttggaaaataaattgcaacatggaggttttgaagtccattctggtcttgaggtatgattctgccttttatacttatca---ttgagcttttttatgtag---
 || || |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| || | |||||||||  ||  |   |      |||||| |     ||  |  |  | || |  | |      ||     ||| || |  | |||   || || |   ||  | |||||||  | |   
GCGATCTTCAAACTTGAGAGGTGACTGGAAAAGAAGGTTCTTTGTTCTTGATAGCCGAGGAATGTTATATTATTATCGCAAGCAGAATAGTAGACCATCTgtaggtcctcactcccctgaataaaat----tattcaaatacttaatttgacttgatattttttacatgcttgtttcatttcagctcataatgttttcgtttttttacttcgtag

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os08g42530.1 (Oryza sativa), 5'ss of exon 12
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagtaatttatttggaaaataaattgcaacatggaggttttgaagtccattctggtcttgaggtat------gattctgccttttatacttatcattgagcttttttatgtag
| | || |||||| |||||| ||| |||||||||||||||||||| |||||||| ||||||||||| || ||||||||||| || |  |  |   || ||||  ||      ||     | | || | |  |||| || |   | | ||  | |  |   |    |||      | | ||| | ||||| |||    |     ||  |  |  ||
AAGATCTTCAAACTTGAGAGCTGATTGGAAAAGAAGGTTTTTTGTCCTTGATAGTCGAGGAATGCTGTACTACTATCGCAAGCAAATTAATAGGACACCTgtaggtccccc-ttgcactagtgaaatact-catgcagctgcaggattctgtccaagatgtacaatatacttaagttcctgtcctttattctttgtttcacttttggtcttccag

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM5G872204_T01 (Zea mays), 5'ss of exon 9
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagtaatttatttggaaaataa-attgcaacatgga--ggttttgaagtccattctggtct-tgaggtatgat----tctgccttttatactt------atcattgagctttt-ttatgtag
| | || |||||| ||||||  ||||||||||||||||| || || |||||||| ||||||||||| || |||||||| ||||| |  |     ||| ||||  ||     || |   |  |    ||| ||     |     || | |    ||| || ||   || | |||||    | |   |   ||| ||      | ||||   ||||  | || |||
AAGATCTTCAAACTTGAGAGCCGACTGGAAAAGAAGGTTCTTCGTACTTGATAGTCGAGGAATGCTGTACTACTATCGAAAACAAATTACTCGGCCACCTgtaggtctccgatgtaacatttgttgttgaaatgctcattaagttggcataatattttgttccacgatgcatgatatattttaattcagatattttcctcaaccatttgcctttgatcatatag

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA18G51810.1 (Glycine max), 5'ss of exon 12
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagtaatttatttggaaaataaattgcaacatggaggttttgaagtccattctggtcttgaggtatgattctgccttttatacttatcattgagcttttttatgtag
 || ||||||||| | || || ||||||||||| || ||||||||||||||||| || |||||||| |||||||| || ||||||  ||||||| ||||||| || | | || |   ||||  ||||||| | |          || | ||      | ||| |||     | |  | | | ||                         
GCGTTCCTCAAACTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTgtaagaagtgtactgtaaaaaataattgcatctttataac---aaatttcacctcatttttgtggtta---tttatcatgtgtag------------------------

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G28890.2 (Glycine max), 5'ss of exon 12
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagtaatttatttggaaaataaattgcaacatggaggttttgaa----gtccattctggtc-ttgaggtatgattctgccttttatacttatcattgagcttttttatgtag-----
 || ||||| ||| | || || ||||||||||| || ||||||||||||||||| || |||||||| |||||||| || ||||||  ||||||| ||||||| || |     | || ||||||| |||     ||  ||  || ||    | | | |    |  |||     | ||      ||| |  || ||  ||| | || |||||   |     
GCGTTCCTCTAACTTAAGGGGGGACTGGAAAAGGAGATTTTTTGTTCTTGATAGTCGGGGAATGCTGTATTACTACCGTAAACAGTGCAGCAAATCATCTgtaagaa-----tgtgaaaaataagttggtttttgagggacttaaactaagcctactaaaataattgcttctttataacaaatttcac-ctcatttttgtggttatttatcatgtgtag

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT5G13300.1 (Arabidopsis thaliana), 5'ss of exon 12
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagt----aatttatttggaaaataaattgcaacatggagg--ttttgaagtc--cattctggtcttgaggtatgattctgcct--tttatacttatcat----tgagcttttttatgtag-------
||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||||   ||||||||||||||||||      ||||| |  |   |  |||  || |  |  |  || || |  |   ||  || || | | |||  | |||   |     || ||| |||     |||  |   |||| |         
ACGATCTTCAAACCTGAGAGGAGACTGGAAAAGAAGGTTTTTTGTTCTTGACAGCCGGGGAATGCTCTATTATTACCGAAAACAGTGTAGCAAACCATCTgtgagttttggttttatatttatcttttatttgaaaacagcagaattatgcaaacggtatggtgttcataaagtaaaaatctatttgacccattcttttcacactctgacttagattatttgatgtttag

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S249_58V6.1 (Physcomitrella patens), 5'ss of exon 7
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagtaatttatttggaaaataaattgcaacatggaggtttt------gaagtccattctggtctt-----gaggtatgattctgccttttatacttatcattgagcttttttatgtag----------------------------------------------------------------
 || ||||||||  ||||||||||||||||  ||||||||||||| || |||||  | |||||| | || ||||  || |||||     | ||||||||||| |||   |   |   ||   | |||   |    | | ||||        | | || | ||    |     ||  | |   ||||  ||| |      |||| | |  || ||    ||                                                                
GCGTTCCTCAAATTTGAGAGGTGACTGGAAGCGAAGGTTTTTTGTGCTGGATAGTAGGGGAATGTTGTACTACTTCCGAAAACAATGGGGGAAACCATCTgtaagtgcatagatccaaactcatattttcatggagtgttttttcatgtagaattcaatgtgaaaattgtaggaaatgtagatctgtgtttcagttccctcat-gtgtgttcttgaccagacataatctcagtttgctaagtttattggcgtaaacgcgaacttgaatgattgtgaacacacag

upper sequence: Vv01s0150g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: PP1S177_40V6.1 (Physcomitrella patens), 5'ss of exon 12
ACGCTCCTCAAACCTGAGAGGTGACTGGAAAAGAAGGTTTTTTGTTCTTGATAGCCGAGGAATGCTATATTACTATCGCAAACAGAACAGCAAACCATCTgtgagtaatttatttgga--aaataaattgcaacatggagg------ttttgaagtccattctggtcttga--ggtatgattctgccttttatacttat-------cattgagcttttttatgtag-----------------------------------
 || ||  ||||  || |||||||||||||  | |||||||||||  | |||||| |||||||||| ||||| ||||| ||||||    |||| ||  | || |||   |  |||  |  |  |  |  |  ||| || |       || ||| | |   | |  ||  ||  |  |     |   |   |||  | |        |  |||  | |||| ||                                      
GCGTTCAACAAATTTGCGAGGTGACTGGAAGCGGAGGTTTTTTGTGTTGGATAGCAGAGGAATGCTGTATTATTATCGGAAACAGTGGGGCAAGCCTACAgtaagttgatattttatactaggttgagagagacacggtgaattcttttctgatgacgtctataatcaagatagacacagaacaatcagatatcatcaaagagatacggtgaattcttttctggttatcatcaaagacttactcattttgtgctgccttag