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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaatacttaaagaactcagaattcccatgttttcttgtgcattttcttttgggggttagatttgaaagcaaacagttataatccttctagtttgaaatcagtaatgactgttcttgtctacacag

Basic information

species Vitis vinifera
transcript Vv01s0146g00310.t01
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351034261|gb|FQ448058.1|FQ448058
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACAC-CC-ACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|351014802|gb|FQ438002.1|FQ438002
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|77587570|gb|DV222950.1|DV222950
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|77577175|gb|DV217284.1|DV217284
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGA
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGA
EST: gi|110378632|gb|EC943772.1|EC943772
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|110391037|gb|EC955989.1|EC955989
EST:     GCTGCTGATATTCTTGCAAAGGAGGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|110371230|gb|EC935083.1|EC935083
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|110713083|gb|EE088693.1|EE088693
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|110687324|gb|EE064645.1|EE064645
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|110387837|gb|EC952535.1|EC952535
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|110428620|gb|EC995097.1|EC995097
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|110718877|gb|EE096214.1|EE096214
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
EST: gi|110385791|gb|EC950347.1|EC950347
EST:     GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAG                         ATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC
genomic: GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaat ... gtctacacagATTATAAATCTGCGTTCAATTAGGCCCCTGGACACACCCACGATCAATGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCTGATATTCTTGCAAAGGATGGAATCAGTGCTGAGgtaaattaatacttaaagaactcagaattcccatgttttcttgtgcattttcttttgggggttagatttgaaagcaaacagttataatccttctagtttgaaatcagtaatgactgttcttgtctacacag

-  GCTGAT
- - - - - - -  GCAAAG
- - - - - - - - -  AGGATG
- - - - - - - - - -  GATGGA