Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACCTTTACAGTCCCTTTGCCTGCAAATCAAAAGTTTAAAACTTGGAAGTATTTCTGAGTTCCTATCTAGGGCTTTGCAGTCTCCAGAGTTGCTAGCGgtgaggttcaattatatttcttctgtgtcatctaattataattttcaaatgtcatatatagaaactgtttctgaggaagattagaatcatgcctatctcgtgatgttgaactctttcattctcatttgttggcag

Basic information

species Vitis vinifera
transcript Vv01s0011g04360.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA09G18490.1 (Glycine max), 5'ss of exon 7
GACACCTTTACAGTCCCTTTGCCTGCAAATCAAAAGTTTAAAACTTGGAAGTATTTCTGAGTTCCTATCTAGGGCTTTGCAGTCTCCAGAGTTGCTAGCGgtgaggttcaatt--atatttc--ttctgtgtcatc----taattataattttcaaatgtcatatatagaaactgtttctgaggaagatta---gaatcatgcctatctcgtgatgttgaactctttcattctcatttgttggcag-------------
||  || || || || || || |||||||| |||||||| ||||| |||||||| ||||||||| | ||||||||||||||||| || ||| | || ||||| | | | ||||  ||  |    || ||||| |||    ||  |  |||      |  |  |   | |    | | | |||   | |||     | ||||       |  | |   |  | | | ||  || | || |||  |               
GATGCCCTTGCAATCTCTCTGTCTGCAAATAAAAAGTTTGAAACTAGGAAGTATATCTGAGTTCTTGTCTAGGGCTTTGCAGTCACCCGAGATACTTGCGgtaatgataaattcaatgctctaattttgtgttatcattttatctccaatacatgcacatttttctttgttgttatctttgaaatacattcactaattcatttggtattgattactatatagtttgtctctcacgttagtttacctatttttttcatag

upper sequence: Vv01s0011g04360.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G25800.1 (Glycine max), 5'ss of exon 15
GACACCTTTACAGTCCCTTTGCCTGCAAATCAAAAGTTTAAAACTTGGAAGTATTTCTGAGTTCCTATCTAGGGCTTTGCAGTCTCCAGAGTTGCTAGCGgtgaggttcaattatatttcttctgtgtcatctaattataattttcaaatgtcatatatagaaac--tgtttctgaggaagattagaatcatgcctatctcg--tgatgttgaactctttcattctcatttgttggcag
 |||||||| || || || ||  | |||||||||||| ||| |||||||||||| || |||||| | |||||||||||||||||||| |||   || | ||| | | | ||||  |||| |||| |   ||   ||  || |  |  | | | || ||   ||    ||| |      |   |     ||||   |||      |  ||     |  |||  |  |||||| ||   ||
AACACCTTTGCAATCTCTCTGTTTACAAATCAAAAGTCTAAGACTTGGAAGTATATCGGAGTTCTTGTCTAGGGCTTTGCAGTCTCCTGAGACACTCGTGgtaacgataaatttgatttattctttagaattccat-gtattcatgtacttttatttaataaattcatgtattcatttattgtgttggtcatttatataaaaatttgtgccagtcatttttttaatcatttattcatag