Sequence
atgc intronic sequence ATGC exonic sequenceGTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: LOC_Os08g10600.3 (Oryza sativa), 5'ss of exon 12
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttt-tgaaaccacattcaagacccacag--gattacccatttaacattgacctaaaat
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GTATGCCTGCATATGTTTACTTTGGATTTTCTTAATCAAGTAACAAATAGTCTTGAAAAGGACAGCATgtaagtattgttactgaagaactattttgttcttgagcattatgattcatgatgtttcatttcgttccaacatttatttccgtatcaaaagttgtggttt---
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G155729_T03 (Zea mays), 5'ss of exon 11
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgc---ttttctgtc--tctttcttttgaaaccacattcaagaccca-caggattacc-catttaacattga---cctaaaat-----------------------------------------------------------------------
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ATCTGCTTGCATATGTTTACTTTGGATTTTCTGAACCAAGTGACAAACAGTCTTGAAAAGGATAGCATgtgagtatttttttctttccttattcttgcactttatccattcatgttacatttaaccctttatttaatatataatgtaattgctgcattttttctggagggcctgtaacttctgttgatcttaaactaacaattaataatagaatattggcttacaattttgtccatcgtttatgcacag
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G044629_T03 (Zea mays), 5'ss of exon 11
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttc----tgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat--------------------------
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ATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttgtctagtttgcctctgccttctctccaaaatgccgtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcag
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GRMZM2G044629_T02 (Zea mays), 5'ss of exon 11
--------------------------------GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttc----tgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat--------------------------
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AAACTGTTCTCTCCTTTTTTTTTTTTTTGTAGATCTGCCTGCACATGTTCACTCTGGACTTCTTGAACCAAGTGGCAAACAGCCTTGAGAAGGACAGTGTgtgagtgttgtctagtttgcctctgccttctctccaaaatgccgtcgccagtcaggccttgagcgatagagtaggcaaccgcatctgttggacctgcctgacagttgtgtgtcgtcgatcttgtgagcag
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G09170.2 (Glycine max), 5'ss of exon 13
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat----
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GTCTGCTTACACATGTTCACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtg-tgttgccttcttaactccaacctt--ctgcccccattatttgtcctccatcttgcttcttattgttttctgaattcca-actgcgaagacatttac
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G26240.2 (Glycine max), 5'ss of exon 12
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat---
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GTCTGCTTACACATGTTCACTCTGGATTTTCTGAATCAAGTGGCAAATGGCCTTGAAAAAGACAGCATgtatgtg-tgttgccttcttcactcca-acctccctgcccccattattc-atcctccatcttgcttcttattgttttctgaattccaactgtgaagacattta
upper sequence: Vv01s0011g01420.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: AT2G35020.1 (Arabidopsis thaliana), 5'ss of exon 12
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttttgaaaccacattcaa-gacccacaggattacccatttaacattgacctaaaat
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GTGTGCTTACACATGTTCACTCTGGATTTCCTTAACCAAGTTGCGAATGGGCTGGAAAAAGACAGCGTgtgagatgctttttactgaaatttt-atcctgcaatatg-caaacatttga---catattcaataactgatagcgaatctcttgcag--------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134049|gb|CB919387.1|CB919387EST: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCAT TTACCATCTTGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGG
genomic: ACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaatt ... gtgagtgtagTTACCATCTAGCAGAGAAGAAAATCGCTTCAACCCACGGATACACAATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTGCTTACATATGTTTACTCTGGATTTTCTGAACCAAGTGGCAAATGGCCTTGAGAAAGACAGCATgtcagtaattttatccttttccttccatgcttttctgtctctttcttttgaaaccacattcaagacccacaggattacccatttaacattgacctaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctaaaa