Sequence
atgc intronic sequence ATGC exonic sequenceTAAGGTCCCAGAGGAATTTGTTCTTCAGCATCCAACTAATGGAAATCCCCCAACTTTATTTTTGGTTTTACATGgtaaggtttttcttcattaaaatttttctatttcattggagattttacttgtcatcattacatttggagattttgcatgcattttataattcaaggaaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G27900.2 (Glycine max), 5'ss of exon 12
TAAGGTCCCAGAGGAATTTGTTCTTCAGCATCCAACTAATGGAAATCCCCCAACTTTATTTTTGGTTTTACATGgta-aggtttttcttcattaaaatttttctatttcattgg-agattttacttgtca---tcattacatttggagattttgcatgcattttataattcaaggaaaa
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TCGGGTCCCAGAGGAATTTGTTCCTCAGCATCCAACTAATGGAAATCCTCCAACTCTGTTTTTAGCATTGAATGgtatatgctaatgttccttttcttttctccttgttataaataggttacaataatttagttcaagcaagtcatagcttgacccttgagtccaggactccag-----
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G10870.1 (Glycine max), 5'ss of exon 13
TAAGGTCCCAGAGGAATTTGTTCTTCAGCATCCAACTAATGGAAATCCCCCAACTTTATTTTTGGTTTTACATGgta-aggtttttcttcattaaaatttttctatttcattggagattttacttgtcatcattacatttggagattttgcatgcattttataattcaaggaaaa---
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TCGGGTCCCAGAGGAATTTGTTCCTCAGCATCCAACAAATGGAAATCCTCCAACTCTGTTTTTAGCATTAAATGgtatatgctaatgttccttttctatttcccctgttataaataaggttaca----ataagcaaagccatagcttgagccttgagtccaggactccaggctgcatg
upper sequence: Vv01s0010g03300.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G27890.1 (Glycine max), 5'ss of exon 12
TAAGGTCCCAGAGGAATTTGTTCTTCAGCATCCAACTAATGGAAATCCCCCAACTTTATTTTTGGTTTTACATGgtaag-----gtttttcttcattaaaatttttctatttcattggagattttacttgtcatcattacatttggagattttgcatgcattttataa-ttcaaggaaaa
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TCGGGTTCCAGAGGAATATGTTCCTCAGCATCCAACAAATGGAAATCCTCCGACTCTGTTTTTAGCATTAAATGgtatatattaattttccttttctattatccttttttttttctagttatgagaatttttattttaaaaagaaggctacatatatgccattaatgagttcga------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|77583689|gb|DV220878.1|DV220878EST: TCAGCATCCAACTAATGGAAATCCCCCAACTTTATTTTTGGTTTTACATG ATCTAGTTTCTAGCTTAAAAAGAAACAAGTTTACTTCCATGGAAAGCAATG
genomic: TCAGCATCCAACTAATGGAAATCCCCCAACTTTATTTTTGGTTTTACATGgtaaggtttt ... tttcttacagATCTAGTTTCTAGCTTAAAAAGAAACAAGTTTACTTCCATGGAAAGCAATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAAGGTCCCAGAGGAATTTGTTCTTCAGCATCCAACTAATGGAAATCCCCCAACTTTATTTTTGGTTTTACATGgtaaggtttttcttcattaaaatttttctatttcattggagattttacttgtcatcattacatttggagattttgcatgcattttataattcaaggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaaa