Sequence
atgc intronic sequence ATGC exonic sequenceGTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGgtacaagttgcatcccctccacagttgttttgtacaaaagaaaagagggaaaaaaaaaaaagagatgaaaggaatggattctattccaatcataaatcgg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: 13114.m00153 (Oryza sativa), 5'ss of exon 15
GTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGgtacaagttgcatcccctccacagttgttttgtacaaaagaaaagagggaaaaaaaaaaaagagatgaaaggaatggattctattccaatcataaatcgg-----------
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GTAAATATCCACACAGACACCTTAAATGAGTCAGGCTGTGTGGAGCATACAATTGCCGCATTTAAAGATAGGACAATACATACATATCATAGgta-----tgcaa----tccacagaatttttacttgcaaacttctatgtactgtaatttttta--ttaaagtaaattttcattttccacttaagggagagctgttcacctt
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA11G37250.1 (Glycine max), 5'ss of exon 13
GTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGgtacaagttgcatcccctccacagttgttttgtacaaaagaaaagagggaaaaaaaaaaaagagatgaaaggaatggattctattccaatcataaatcgg----
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GTTAACATACATACTGACACCTTAAACGAATCTGGATTTGTTGAACATACAATTGCTGCATTTAAAGGAAGAACTATTCATACTTACCACAGgta----ttgtttaactttgaaattttttataaagcaccggcatagcatggttgttatttgttaactactgttgtaacagttgtttaggaaaaatatccatttt
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA05G27840.1 (Glycine max), 5'ss of exon 12
GTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGgtacaagttgcatcccctccacagttgttttgtacaaaagaaaagagggaaaaaaaaaaaagagatgaaaggaatggattctattccaatcataaatcgg------
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ATTAACATACATACCGACACCCTAAATGAAGCTGGATTTGTCGAACATAGCATTGCAGCATTTAAAGGAAGAACTATTCATACTTACCACAGgtataa----tgctaacatcacaattgtttcccccttataaatctcagacatgacatgtaaaattcaatctataggagtattagtgtaa--ggaaagcagctaata
upper sequence: Vv01s0010g02760.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA08G10850.1 (Glycine max), 5'ss of exon 13
GTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGgtacaagttgcatcccctccacagttgttttgtacaaaagaaaagagggaaaaaaaaaaaagagatgaaaggaatggattctattccaatcataaatcgg
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ATTAACATACATACTGACACCTTAAAAGAAGCTGGATTTGTCGAACATAGTATTGTTGCATTTAAAGGAAGAACTATTCATACTTACCACTGgtataa----tgctaacttcaaaattgtttt-catcttataagtctcagacatgacaagtaaa-attctatctatag-----------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720992|gb|FC070359.1|FC070359EST: GAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAG TGAAGGTGCTGGTGGTGGTCATGCTCCAGATATCATCAAAGTATGTGGTGT
genomic: GAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGgtacaagttg ... ttttgtgcagTGAAGGTGCTGGTGGTGGTCATGCTCCAGATATCATCAAAGTATGTGGTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAATATCCACACTGACACCTTGAACGAGTCTGGCTTTGTGGAACATACAATTGCTGCGTTTAAAGATAGAACTATTCATACTTACCACAGgtacaagttgcatcccctccacagttgttttgtacaaaagaaaagagggaaaaaaaaaaaagagatgaaaggaatggattctattccaatcataaatcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaggaat