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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCACTTCCACCTATGCCTGAAGATGGTGGTTACTGGTCTGCGTTGCATAGCTGGGTGATGCCAACCCCTTCCTTTCTAGAGTTCATAATGTTTTCCAGgtaatttagagggcaaaactgctattttaaattggccgctttatttagttgtatccaatcatagcacctctcatctaaatttatgattagaagttttcaactaatttatcacag

Basic information

species Vitis vinifera
transcript Vv00s0250g00030.t01
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv00s0250g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA20G33200.1 (Glycine max), 5'ss of exon 12
AAGCACTTCCACCTATGCCTGAAGATGGTGGTTACTGGTCTGCGTTGCATAGCTGGGTGATGCCAACCCCTTCCTTTCTAGAGTTCATAATGTTTTCCAGgtaatttagagggcaaaactgctattttaaattggccgctttatttagttgtatccaatcatagcacctctcatctaaatttatgattagaagttttcaactaatttatcacag
||||||| || || ||||| |||||||||||||| ||||| ||  |||| |||||||||||||||||| |||| ||  | |||||||||||||| ||  ||||||| |     |     |    ||| | |   |  | || ||| |   |||     |    |    | | |    ||       | | | ||| |||| | | |     |||
AAGCACTGCCCCCCATGCCGGAAGATGGTGGTTATTGGTCAGCACTGCACAGCTGGGTGATGCCAACCTCTTCTTTCTTGGAGTTCATAATGTTCTCTCGgtaattaatgaatccttgttagc-tttcataacagtaggttaattaaag-gtactttcttgatgtgaatgtgactagaaacc----tgaaatgttgtcaattgaat----gcag

upper sequence: Vv00s0250g00030.t01 (Vitis vinifera), 5'ss of exon 12
lower sequence: GLYMA10G34360.1 (Glycine max), 5'ss of exon 12
---AAGCACTTCCACCTATGCCTGAAGATGGTGGTTACTGGTCTGCGTTGCATAGCTGGGTGATGCCAACCCCTTCCTTTCTAGAGTTCATAATGTTTTCCAGgtaatttagagggcaaaactgctattttaaattggccgctttatttagttgtatccaatcatagcacctctcatctaaatttatgattagaagttttcaactaatttatcacag
   ||||||| || || |||||||||||||||   || ||||| ||  |||| ||||||||||||||||||||||| ||  | |||||||||||||| ||  ||||||| |     |     |    ||   ||         ||| |||   |||     |    |    | | |    ||       | | | ||| |||| | | |     |||
CAGAAGCACTGCCCCCCATGCCTGAAGATGGT---TATTGGTCAGCACTGCACAGCTGGGTGATGCCAACCCCTTCTTTCTTGGAGTTCATAATGTTCTCTCGgtaattaatgaatccttgttagctttcctaac--attaggttaattaaaggtactttcttgatgtgaatgtgactagaaacc----tgaaatgttgtcaattgaat----gcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122690620|gb|EC955089.1|EC955089
EST:     AGCTGGGTGATGCCAACCCCTTCCTTTCTAGAGTTCATAATGTTTTCCAG                         GATGTTTGCTGATTCGCTTGATGCGTTGCATATGAATTCAAGGCAGTCCAT
genomic: AGCTGGGTGATGCCAACCCCTTCCTTTCTAGAGTTCATAATGTTTTCCAGgtaatttaga ... tttatcacagGATGTTTGCTGATTCACTTGATGCGTTGCATATGAATTCAAGGCAGTCCAT