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TTAAAAGCCCACCTTCTTCAGAGCTTAGTTCAGGGATCCCATCTATTCCATCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAGgtaattgtgaaacctttcctcatctaatttggctgatgccactttcaaatttagatgcaacatgcatttttttggtaaaacctgagtagtacatgatgtt...
species | Vitis vinifera |
transcript | Vv00s0229g00030.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAG GTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCAEST: gi|33405955|gb|CF211582.1|CF211582
genomic: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAGgtaattgtga ... attgtggcagGTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCA
EST: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAG GTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCAEST: gi|349815217|gb|FQ400372.1|FQ400372
genomic: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAGgtaattgtga ... attgtggcagGTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCA
EST: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAG GTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCAEST: gi|349814107|gb|FQ414341.1|FQ414341
genomic: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAGgtaattgtga ... attgtggcagGTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCA
EST: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAG GTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCAEST: gi|349820093|gb|FQ404815.1|FQ404815
genomic: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAGgtaattgtga ... attgtggcagGTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCA
EST: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAG GTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCAEST: gi|351024003|gb|FQ423426.1|FQ423426
genomic: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAGgtaattgtga ... attgtggcagGTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCA
EST: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAG GTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCA
genomic: TCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAGgtaattgtga ... attgtggcagGTATGTTGACACCTTCAACAAAGGTGGTGGGAGCCCAGCCAACTTATTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAAAAGCCCACCTTCTTCAGAGCTTAGTTCAGGGATCCCATCTATTCCATCCAGCTCGAATCAATTCTCAGCTCGTGGACGAATGGGTGTTCGTTCAAGgtaattgtgaaacctttcctcatctaatttggctgatgccactttcaaatttagatgcaacatgcatttttttggtaaaacctgagtagtacatgatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtaaaa