1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgatttaaatttgtttataggaagatgtcgtagtgctcttgttctaccttctttttttaatgcagcacatagcttaaatagttgtaaatgtttcttggatatttttctgaagttcacctgccacattaatttcacacag
species | Vitis vinifera |
transcript | Vv00s0187g00340.t01 |
intron # | 12 |
splice site | 5' |
intron type | U2 |
EST: GCAACTTAAAGCCAGGCGATCTCCTTGGAACTGGAAC-ATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTA-CATGGAATGGACAAAEST: gi|110705725|gb|EE082899.1|EE082899
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAA
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|37187151|gb|CF606504.1|CF606504
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|110363209|gb|EC926783.1|EC926783
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|110404256|gb|EC969031.1|EC969031
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: TTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|110402111|gb|EC968746.1|EC968746
genomic: TTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|110361741|gb|EC925237.1|EC925237
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|110364853|gb|EC928407.1|EC928407
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|110372453|gb|EC936619.1|EC936619
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|45771743|gb|CN007595.1|CN007595
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|110702040|gb|EE080300.1|EE080300
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|37187213|gb|CF606566.1|CF606566
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|110361518|gb|EC924998.1|EC924998
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAGEST: gi|37189933|gb|CF609282.1|CF609282
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
EST: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCT GAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
genomic: GCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgattta ... tttcacacagGAACCGGAATCTTTGGGATGCTTGCTAGAATTAACATGGAATGGACAAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATTGGACACTGACTCAACAACTTGCACACCATACAATCAATGGTTGCAACTTAAGGCCAGGCGATCTCCTTGGAACTGGAACCATAAGTGGACCTgtatgatttaaatttgtttataggaagatgtcgtagtgctcttgttctaccttctttttttaatgcagcacatagcttaaatagttgtaaatgtttcttggatatttttctgaagttcacctgccacattaatttcacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA