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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCGTGAATGAATACCTGGAAAGCCAGAAGGAGAATATAACAAGTGTGATCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttcctttgtaaatatacccactagtctctgctcaatgctcatcagtgggctgcttcatattgtgttgtttccatttaagatgaacaggatctcatttacaagttacccatatacaaacaatgaaggatatgtttgctctgtgttgcag

Basic information

species Vitis vinifera
transcript Vv19s0090g01210.t01
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351048256|gb|FQ442226.1|FQ442226
EST:     TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAG                         TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
genomic: TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttc ... tgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
EST: gi|254915760|gb|GR905191.1|GR905191
EST:     TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAG                         TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
genomic: TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttc ... tgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
EST: gi|71868474|gb|DT017529.1|DT017529
EST:     TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAG                         TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
genomic: TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttc ... tgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
EST: gi|351056173|gb|FQ453635.1|FQ453635
EST:     TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAG                         TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
genomic: TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttc ... tgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
EST: gi|351040007|gb|FQ425093.1|FQ425093
EST:     TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAG                         TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
genomic: TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttc ... tgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
EST: gi|254915870|gb|GR905301.1|GR905301
EST:     TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAG                         TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
genomic: TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttc ... tgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
EST: gi|30320634|gb|CD003896.1|CD003896
EST:     TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAG                         TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
genomic: TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttc ... tgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
EST: gi|110405973|gb|EC971531.1|EC971531
EST:     TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAG                         TTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC
genomic: TCAAACAGAATCTAGCAGTGGGAGACATATTTAGACGTGAAAATTTGCAGgtcagctttc ... tgtgttgcagTTTCCAACAGAGGAGCTTGTCAAAGAGGTGGAGAACTCCATTTCAGAATTC