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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTgtgagttattactctataattatcatggaaatttctagattatcattctgtagcacctgaaacttaatcttttatatgatcaaag

Basic information

species Vitis vinifera
transcript Vv19s0090g01130.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os04g57350.1 (Oryza sativa), 5'ss of exon 11
AAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTgtgagttattactct-ataattatcatggaaatttctagattatcattctgtagcacct-----gaaactta--------atcttttatatgatcaaag
|||||||||||| || |||||||||||||| || |||||  || || ||||||| || |||||| | || || || || |||||||| ||||| ||| | ||   ||  | ||||   | | || ||   | ||  ||  || ||||| ||| ||||       ||| || |        |||||||| ||   |||  
AAACACAATTGCCGTGCAAGCAGACATGCCATATAGTGGCTTGTCATCTTTTGGGACAGCATTTCTATCAAAGTTTGAATGTTCTCAGATGCCTCATCCAgtatattccttctcttgcactgattattctacttcatatttt-tcattatgttgcactcagaaagaagctaattgttagcatcttttacattgccaag-

upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G065012_T02 (Zea mays), 5'ss of exon 11
AAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTgtg-agttatta-ctctataattatcatggaaatttctagattatcattctgtagcacctgaaacttaatcttttatatgatcaaag
|||||| || || || ||||| |||||||| |||||||| ||| || | || ||||| |||||||||||||| ||||| |||||||| ||||| ||| | ||  | |  |||   | | |   |  ||  |    ||    ||    ||  | || | || | ||   | |  ||   |  | ||||
AAACACCATCGCCGTCCAAGCTGACATGCCATACAGTGGCCTGTCATCGTTCGGAACAGCATTTTTGTCCAAGTTCGAATGTTCTCAGATGCCACATCCAgtacaatccttaatcccacacccagtatttat-catccgacttgctgtt--ggagaaactaacacc--accagtttctttgtgaaag

upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA18G10150.1 (Glycine max), 5'ss of exon 11
AAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTgtgagttattactctataattatcatggaaatttctagattatcattctgtagcacctgaaacttaat--cttttatatgatcaaag--------
 || || |||||||| |||||||||||||| |  |||||||| ||||||||||| ||  |||||||||||||||| ||||||||||||||||| ||| |||| || | ||       || |   |   |||||   | ||     |||||| |||  || ||||||     |||| ||| |||||          
CAATACTATTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGTACATCATTTTTGTCCAAATTTGAGTGTTCTCAAATGCCTCATCCTgtaagcttttctataccaaattaaaccaaaattaagatatatctcttctgtggcatttggaacttacctatttttttattatcaattatccaaag

upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA02G46350.2 (Glycine max), 5'ss of exon 11
AAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTgtgagttattactctataattatcatggaaatttctagattatcattctgtagcacctgaaacttaatcttttata--tgatcaaag
||| ||  ||||||| |||||||||||||| |  |||||||| ||||||||||| || ||||||||||| ||||| | |||||| || ||||| ||| |||| ||||  |   ||| |  | |     || |||  |   | ||  | | |||||  |  || | | ||||||  |  ||  |||||
AAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGTCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTgtaagttgat---ctagatctgttcaaaaagtttacaagatttccctttatagcatttagaattgactctttttcaattgtccaaag

upper sequence: Vv19s0090g01130.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G20290.2 (Arabidopsis thaliana), 5'ss of exon 11
AAACACAATTGCTGTTCAAGCAGACATGCCTTACAGTGGTCTGACAACTTTTGGAACGGCATTTTTGTCCAAATTCGAGTGTTCTCAAATGCCGCATTCTgtgagtt--attactctataattatcatggaaatttctagattatcatt--ctgtagcacctgaaacttaatcttttatatgatcaaag---------
 |||||| | || ||||||||||| ||||| | ||||||||| ||||||||||| || || |||||||| || || || || ||||| ||||| ||  ||||  |||  |  ||   ||  || | |  | |  |  |  ||||   ||  |||||     |      ||||  || ||    |||            
GAACACAGTAGCAGTTCAAGCAGATATGCCATTCAGTGGTCTTACAACTTTTGGGACTGCCTTTTTGTCAAAGTTTGAATGCTCTCAGATGCCTCACCCTgtatgtttaacaacctcatgcttctgacaggagatcgttcattacttttgcctgtattgatttgctgataattgttgatccattcatctttgtttaag