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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttcatttgcataatttccactcaagtttatgcacattttatatgcgagtttaatctgagaattgctttcacttcatcacagatagaaaccatggtcattgtcatgagggtttcatttaactataaactaaataagttattgttttttttcttgacaatag

Basic information

species Vitis vinifera
transcript Vv19s0085g00720.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00720.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G16340.3 (Arabidopsis thaliana), 5'ss of exon 12
GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttcatttgcataatttccactcaagtttatgcacattttata-tgcgagtttaatctgagaattgctttcacttcatcacagatagaaaccatggtcattgtcatgagggtttcatttaactataaactaaataagttattgttttttttcttgacaatag
|||||  |||||||| ||||||| || ||||| |||||||||||||||||||| || | ||      ||||    ||  |  ||     |   | | |||    || |||   |  || ||| |  ||||                                                                                     
GTGCATGATGATCCTTTAAATGCACCGGTCGATGGTCCAACACAATGGgtgagttttactttt----tttcagaccatatccattagtctaacacaatgcattcttgatcatcgtttttcttcccgttcag------------------------------------------------------------------------------------

upper sequence: Vv19s0085g00720.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G79500.4 (Arabidopsis thaliana), 5'ss of exon 11
GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttcat---ttgcataatttccactcaagtttatgcacattttatatgcgagtttaatctgagaattgctttcacttcatcacagatagaaaccatggtcattgtcatgagggtttcatttaactataaactaaataagttattgttttttttcttgacaatag
|| ||  |||||||||||| ||||||||| || |||||||| ||||||||||| || ||    | |  ||| |  ||  ||||  || ||  |  |   ||| |   |  | |||  ||| |||    ||   ||  |  | |                                                                          
GTTCATGATGATCCTCTAAGTGCTCCAGTTGATGGTCCAACTCAATGGgtgagttttatgtcctactcaatgtttacgaaagt--atccatctcgttcttgcaa---tggtgtgaatatt-cttgtgtttttccattgtcaaag-------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30127062|gb|CB912401.1|CB912401
EST:     GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG                         CCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
genomic: GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttca ... ttgacaatagCCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
EST: gi|110388217|gb|EC952948.1|EC952948
EST:     GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG                         CCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
genomic: GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttca ... ttgacaatagCCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
EST: gi|30252497|gb|CB970048.1|CB970048
EST:     GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG                         CCTTTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
genomic: GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttca ... ttgacaatagCCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
EST: gi|110360517|gb|EC923683.1|EC923683
EST:     GTGCCCAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG                         CCTTTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
genomic: GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttca ... ttgacaatagCCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
EST: gi|30128204|gb|CB913543.1|CB913543
EST:     GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGG                         CCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT
genomic: GTGCACAATGATCCTCTAAATGCTCCAGTCGACGGTCCAACACAATGGgtgagcttca ... ttgacaatagCCTCTACGCCATTTGGAGGAACTGCTGGAAGAGCTTGTGGCAATAGCT