Sequence
atgc intronic sequence ATGC exonic sequenceGAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctctctctctctctctctctctctatctatctatctatctatcatgcccaagtatgatttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os06g45590.1 (Oryza sativa), 5'ss of exon 11
GAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctctctctctctctctctctctctatctatctatcta-tctatcatgcccaagtatg---atttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
| ||||||||||| || || |||||||| |||||||| || ||||| || || || ||| |||| |||||| | ||||| ||||| |||||||| | |||||| | || ||| | || | || || || | | |||| | | | |||| | | | || | ||| | || ||
GTATGGCCTTCCGAGTTCCTACACCTAACGTCTCTGTAGTTGACTTGACATGCCGTCTTGAGAAAAGTGCTTCTTATGAGGATGTGAAAGCAGCTATCAAgtatgccttcaatcttcttgtca-tgtcctagcacatttagttgctgcttcattgcttaatgcactcattttttcgttggtgtttatattctgttcagttt-----------------
upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G051004_T01 (Zea mays), 5'ss of exon 11
GAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctctctctctctctctctctctctatctatctatctatctatcatgcccaagtatgatttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
| ||||||||||| || |||||||| |||||||||||||||||||| || || || || |||| | || | ||||| ||||| ||||||||| | |||||| | | ||| || | || | | | ||| | || || ||| | | | ||| ||| | |||| || |
GCATGGCCTTCCGAGTTCCAACACCAAATGTCTCTGTTGTGGACTTGACATGCCGGATTGAGAAAAACGCCTCCTATGATGATGTGAAAGCAGCCATCAAgtatg---------tagaagtacctcacttgttgcttccgtatggttttcagcttccggtttg--ctattctgatgagtgaaagcacaacctcttgataaattagtaatca---
upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G104632_T01 (Zea mays), 5'ss of exon 11
GAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctctctctctctctctctctctctatctatctatctatctatcatgcccaagtatgatttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
| ||||||||||| || |||||||| ||||||||||||||||| || || || || || |||| || || | ||||| ||||| ||||||||| | |||||| | | || | | || ||| | ||| |||| | | || | | | | | | |||| | || | | | | ||
GTATGGCCTTCCGAGTTCCAACACCAAATGTCTCTGTTGTGGATTTGACATGCCGGATTGAGAAAAGCGCCTCCTATGATGATGTGAAAGCAGCCATCAAgtatg-tagaagtaccttgttatttccgtctgctttgttattc--ctatga-gtggaaacacaacct--cttgataaattagtaataaatgatt-tcaaggctcaca-------
upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA03G22790.1 (Glycine max), 5'ss of exon 11
GAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctctctctctctctctctctctctatctatctatctatctatcatgcccaagtatgatttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
| ||||| ||||| || || || || ||||| ||||| |||||||| ||||| || |||||||||| |||| | ||||||||||| |||||||| |||||||| | | | | | | | ||| | | || | || | | | || ||| | | | | || | || || | || | |
GGATGGCATTCCGTGTACCGACTCCCAATGTTTCTGTGGTGGACTTGACTTGCCGGCTTAAGAAGAATGCTTCCTATGAAGATGTTAAAGCAGCAATAAAgtatgtctattgcgttttttttttttggtct--ccactctgctgtg-attgttctgtactaaccttttgcttgatttct----atgactttgctactgaaaaatatgaag----
upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA16G09020.1 (Glycine max), 5'ss of exon 11
GAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctctctctctctctctctctctctatctatctatctatctatcatgcccaagtatgatttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
| ||||| ||||| || || || || ||||| ||||| |||||||| ||||| || |||||||||| ||| | ||||||||||| |||||||| |||||||| | | | | | | ||| | | | || | || | | | | | | | | || | | | | || || | || | |
GGATGGCATTCCGTGTTCCGACTCCCAATGTTTCTGTGGTGGACTTGACTTGCCGGCTTAAGAAGAATGCATCCTATGAAGATGTTAAAGCAGCAATAAAgtatgtctattgctttttgtttttttgctccaccctcattgctgtg-attgttc-----tgtaaccttttgcttgatttcta--tgactttgctactgaaaaatatgaag----
upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G16300.1 (Arabidopsis thaliana), 5'ss of exon 11
GAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtat-actctctctctctctctctctc-tctctatctatctatctatctatcatgcccaagtatgatttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| ||||| ||| | |||||||| ||||| |||||| |||||||| |||||| || | || | | | | ||||| || | | | | || | || || | | ||| || || ||| || |||
GAATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGACTTGAGAAGGATGCATCGTATGAAGACGTCAAGGCAGCCATAAAgtattactctcaaaacctgttcaactaatttgcgtaccattctctatacatgaataaaacatggaacttgtaataacatctcatgatt----ttgatttgaaatctctaacag---
upper sequence: Vv19s0085g00600.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G79530.1 (Arabidopsis thaliana), 5'ss of exon 11
GAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctctctctctctctctctctctct-atctatctatctatctatcatgcccaagtatgatttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
||||||||||||| || |||||| | ||||| ||||| ||||| ||||||||||||||| ||||| |||| | || |||||||| || |||||| | |||||| || || | | | | | | || | ||| | || || | | | | || | | || || | | || || |||
GAATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTGTCGACTTGAGAAGGGTGCCTCTTACGAAGATGTTAAGGCAGCCATTAAgtatgcttcctaaaattttattgcccgaccagatatcgtcatcgaaacattatcgtttaatgtagaactcttaataacctc----tcatggtttaatgtaaacctctaacag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71856406|gb|DT005461.1|DT005461EST: TGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTGAA GTATGCCTCAGAGGGGCCATTGAAGGGTATTCTTGGATACACGGATGAGGA
genomic: TGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctc ... ccaactaaagGTATGCCTCAGAGGGGCCATTGAAGGGTATTCTTGGATACACGGATGAGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAATGGCCTTCCGCGTCCCAACACCTAATGTCTCTGTTGTGGACTTAACTTGTCGACTTAAGAAGAGTGCTACATATGAAGATGTCAAAGCAGCCGTAAAgtatactctctctctctctctctctctctctatctatctatctatctatcatgcccaagtatgatttatcccaaaatattaaaattatctttctctttgaatttccaactaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG