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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGTGATGATAGACAGCATGACATGCAAAAGGCTGCTGCTTTTATAAAACGATTGGCTACATTCTCGTTATGCTTTGGGTCTGCGGAGTCCATGGCTGgtacattacctatttcctaatgcctacttatttttcatcaggtactttgttattgttttatttgtctcaccccctacttctttcaaaatttttgcag

Basic information

species Vitis vinifera
transcript Vv19s0085g00020.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0085g00020.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G07470.1 (Glycine max), 5'ss of exon 11
CTGTGTGATGATAGACAGCATGACATGCAAAAGGCTGCTGCTTTTATAAAACGATTGGCTACATTCTCGTTATGCTTTGGGTCTGCGGAGTCCATGGCTGgtacattacctatttcctaatgcctacttatttttcatcaggtactttgttattgtt--ttatttgtctcaccccctacttctttcaaaatttttgcag-----------------------------------------
 ||||||||||||  || ||||||||||| ||| ||||||| |||||||||||||| || ||  | ||  | ||  |||| || ||||| |||||||||||||  |||   || | || ||  | || |    ||  |||  | |  |  ||   ||  | |    || ||     ||      | ||||                                                  
TTGTGTGATGATAAGCAACATGACATGCAGAAGACTGCTGCATTTATAAAACGATTAGCAACGCTTTCACTGTGTGTTGGATCAGCGGATTCCATGGCTGgtatttta---atattcttatatcaaccttcaatt--tcatatgccctactacctttggtaagaaatcgcaggaaatagaaaactaaaaaaacaaaagagaaacaaacttatatttagtttttctttgaacccatttcag

upper sequence: Vv19s0085g00020.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G39100.1 (Glycine max), 5'ss of exon 12
CTGTGTGATGATAGACAGCATGACATGCAAAAGGCTGCTGCTTTTATAAAACGATTGGCTACATTCTCGTTATGCTTTGGGTCTGCGGAGTCCATGGCTGgtacattacctatttcctaatgcctacttatttttcatcaggtactttgttattgtt--ttatttgtctcaccccctacttctttcaaaatttttgcag-----------------------------------------
 ||||||||||||  || || |||||||| ||| ||||||| |||||||||||||| || ||  | ||  | ||  |||| || || || |||||||||||||  ||    || | |  ||  | || |    ||  |||  | |  |  ||   ||  | ||    | ||     ||      | ||||  |                                               
TTGTGTGATGATAAGCAACACGACATGCAGAAGACTGCTGCATTTATAAAACGATTAGCAACGCTTTCACTGTGTGTTGGATCAGCAGATTCCATGGCTGgtatgtt-ttaatattcctatatcaaccttcaatt--tcatatgccctactacctttggtaataaaacacaggaaatagaatactaaaaaaataaaagagaaacaaacttatatttagttttcttttgaacccatttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30128804|gb|CB914143.1|CB914143
EST:     ACGATTGGCTACATTCTCGTTATGCTTTGGGTCTGCGGAGTCCATGGCTG                         CCTTGGTTACTTTAAAGCATCTTCTTCAGAAGAATGTTAAGTGCCGGCATC
genomic: ACGATTGGCTACATTCTCGTTATGCTTTGGGTCTGCGGAGTCCATGGCTGgtacattacc ... atttttgcagCCTTGGTTACTTTAAAGCATCTTCTTCAGAAGAATGTTAAGTGCCGGCATC