Sequence
atgc intronic sequence ATGC exonic sequenceGAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAGgtcagtttttaatcaaaatttttaactggtgtccatgtggacgaattaaacccaaatatattccctgtgattccaacaaagttctcagcagttattgaaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G55730.2 (Arabidopsis thaliana), 5'ss of exon 12
GAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAGgtcagtttttaatcaaaatttttaactggtgtccatgtggacgaattaaacccaaatatattccctgtgattccaacaaagttctcagcagttattgaaa
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GAAGGAACATCGAATTACTTCAAAGGATTGATGCTCATTCTTTGCTATTTGATAGTCGCCGCTAGTTTCTTTGTACACGAAGATCCT-CATCA--AGgttagtgttgaatttgctatatatattcctttctctgtgtcaactctctgttgaaacctgtttt-tgtcttcttat-----tttttgacag---------
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G55720.1 (Arabidopsis thaliana), 5'ss of exon 11
GAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAGgtcagtttttaatcaaaatttttaactggtgtccatgtggacgaattaaacccaaatatattccctgtga------ttccaacaaagttctcagcagttattgaaa--------------------------------------------------------------------------------------
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GAAGGGACATCGAATTACTTCAAAAGATTGATGCTCATTCTTTGCTATTTGATAGTCGCTGCTAGTTTCTTTGTACACGAAGATCCT-CATCA--AGgttagtgttgaatttgctatatacacctttctctgtgtcaacaag--aaaacctaatatctctgctgaaacgtgttttttttttgtgttcttatttcttgacagatgatataaaaattaaccaaccctaaagaacacaatatggtgtgtgagacagtttgtgtcataaaactaatcccttatatgatctcag
upper sequence: Vv19s0015g01320.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT3G13320.1 (Arabidopsis thaliana), 5'ss of exon 12
GAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAG--TAGgtcagtttttaatcaaaattt--ttaactggtgtccatgtggacgaattaaacccaaatatattccc----tgtgattccaacaaagttctcagcagttattgaaa----------------------------------------------------------
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GAAGGGTCATCGAATTACTTCAAAGGATTGATGCTGATTCTTTGTTATTTGATAGTAGCTGCCAGTTTCTTTGTACACGAAGATCCTCACCAAGgttagttcatttgaataccataaactgagtattttctggttatggcttgtgcttgttccatgatacggtcatgaaatggaactgctagagaagtttttctctttcttgcatattcaacaagacattctggtgatattttcatatttctctgttgtgttgttttggttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110419132|gb|EC985334.1|EC985334EST: TCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAG AACATAAAACATAGTGAGTGAAGCTGTGGATTCGTGAGGTGGATCTCCTAA
genomic: TCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAGgtcagttttt ... gattttgcagAACATAAAACATAGTGAGTGAAGCTGTGGATTCGTGAGGTGGATCTCCTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAGGCACTTCTAATTACTTTAAAGGACTAATGCTCATTCTTTGCTATCTAATAGTTGCAGCAAGTTTCTTTGTACATGTCGATCCTACTTTAGTAGgtcagtttttaatcaaaatttttaactggtgtccatgtggacgaattaaacccaaatatattccctgtgattccaacaaagttctcagcagttattgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaag