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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTGgtgaggtgttttctttctcacaatgtcaaaggaatattcaacccctcaaatttattaattcttttattttcttgtgcaagtgatattcttggtcagaacgctactttctttataacaactgttttcttataagttgaaatttctttag

Basic information

species Vitis vinifera
transcript Vv19s0014g03680.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G34750.1 (Glycine max), 5'ss of exon 6
ATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTGgtgaggtgttttctttctcacaatgtcaaaggaatattcaacccctcaaatttattaattc-ttttattttcttg--tgcaagtgatattcttggtcagaacgctactttctttataacaactgttttcttataagttgaaatttctttag
 || | ||||| |||||  | ||||||||||| |||||||||| ||| ||||||||||| ||||||||||||||  |  | ||| ||       |||    |  | | |||      |        ||||||   | | |  | |||  |||     |  ||||||      |  |                                               
GTTATACTAAAAGATGAGCCGGACATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTGgtatgtgggtttgttatatcggatg----aaaatttttctgttttttttgccatttaatttgctgtgtccttttggttgcttacaaacttcttgtgggagagac-----------------------------------------------

upper sequence: Vv19s0014g03680.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA14G12420.1 (Glycine max), 5'ss of exon 7
ATTGTGCTAAAGGATGAAGCTGACATTGATCCAAATGATCAAACTTCAATTCTTGAACATCTAGACAAAGTGgtgaggtgttttctttctcacaatgtcaaaggaatattcaacccctcaaatttattaattcttttattttcttg--tgcaagtgatattcttg---gtcagaacg--ctactttctttataacaactgttttcttataagttgaaatttctttag
 || | ||||| ||| |  | || |||||||| |||||||||| ||| ||||||||||| ||||||||||||||  |  | ||||||    | | ||    |  | | |       |       ||| | || || | |  | |||  |||     |  ||||||   |  ||| |   |||  |   || | || |  || ||| | |   |||     || |   
GTTATACTAAAAGATAAGTCGGATATTGATCCCAATGATCAAAGTTCTATTCTTGAACACCTAGACAAAGTGGTATgtgggtttctta---atattggatgaaaattttgttgtttcctggccatataatttgttgtgtccttttggttgcttacaaacttcttgtgggagagaccaacctaggtctcttttgaccatagtcttcctct---ttggttcctcatag-