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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTCGTCCAGGGGATTCCTCTTGTGAAAGTCTCTGACAGACATTTTTGGTTCAGTTGGCCACAGCTAGTTCTTTATCTCATTCACTTCACCCTGTTTCTGgtattgaactgccttttcttatatgaatgattataaatagtggctgaggtgctggcacattctctgaattaggagccacctatatgtgtgtctgcttagatataatatcacatatctttatgttttgatggcctggtttctagaatttttctgactaacttgttccttctacatgtccag

Basic information

species Vitis vinifera
transcript Vv18s0122g00910.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA04G01710.1 (Glycine max), 5'ss of exon 12
TGTCGTCCAGGGGATTCCTCTTGTGAAAGTCTCTGACAGACATTTTTGGTTCAGTTGGCCACAGCTAGTTCTTTATCTCATTCACTTCACCCTGTTTCTGgtattgaactgccttttcttatatgaatgattataaatagtggctgaggtgctggcacattctctgaat-taggagccacctatatgtgtgtctgcttagatataatatcacatatctttatgttttgatggcctggtttctagaatttttctgactaacttgttccttctacatgtccag
||| || || ||||| ||||||||| ||||||||||||   ||||||||||    ||||| ||| |||||||||||||||| || |    ||| |||| |||| | |      |  | || | |  |  ||  |   |||| |||    ||     | | ||| || || |  |||   | || || | ||     ||    | ||                                                                           
TGTAGTGCAAGGGATCCCTCTTGTGCAAGTCTCTGACAAGTATTTTTGGTTTGCATGGCCTCAGTTAGTTCTTTATCTCATCCATTATGTCCTCTTTCAGgtactcagtcctgtgctgttctttttactatagtt--tagtagct----tgacaa-atactctatgcatatctgagatccttaaatatttgaagaatttctcacaac--------------------------------------------------------------------------

upper sequence: Vv18s0122g00910.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA06G01800.1 (Glycine max), 5'ss of exon 11
TGTCGTCCAGGGGATTCCTCTTGTGAAAGTCTCTGACAGACATTTTTGGTTCAGTTGGCCACAGCTAGTTCTTTATCTCATTCACTTCACCCTGTTTCTGgta-ttgaactgccttttcttatatgaatgattataaat-agtggctgaggtgc-tggcacattctctgaattaggagccacctatatgtgtgtctgcttagatataatatcacatatctttatgttttgatggcctggtttctagaatttttctgactaacttgttccttctacatgtccag
||| || ||||| || ||||||||| ||||||||||||   ||||||||||    ||||| ||| |||||||||||||||| || |    ||| |||| |||| | |  | | | | |  | |     | | ||||  | ||| ||| | |    |   | || ||    ||| | ||        || | |  |  ||| ||| |  |    || || |  |                                                            
TGTAGTGCAGGGAATCCCTCTTGTGCAAGTCTCTGACAAGTATTTTTGGTTTGCATGGCCTCAGTTAGTTCTTTATCTCATCCATTATGTCCTCTTTCAGgtactcggtcagtcctgtgctgttcattttactatagtttagtagcttatgcaaatctgagatcctgaatatttgaaga-------atttctcacgactttgatgttttgcttcacatgtccag-----------------------------------------------------------