Sequence
atgc intronic sequence ATGC exonic sequenceGTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGgtatattttctttgattgcgcacctgttcttgtgctggcagtatttatttatatattcaggattgtgcgtaattttaatccttcatacctaaaaaatctattcgattttttattttatttttttattttttattttttatttttattag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA09G00430.2 (Glycine max), 5'ss of exon 11
GTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGgtat-attttctttgattgcgcacctgttcttgt--gctggcagtatttatttatatattcaggattgtgcgtaattttaatccttcatacctaaaaaatctattcgattttttattttatttttttatt-----ttttattttttatttttattag--------------------------
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GTACATCGTGTCCTGATAGATATTGTTTCGTCTGCTGCCAATGCTACACCTGGTTTGGGAAGATACCCACCTTTCAAGAGAGAGgtattgtacttcatttctgtttttctgtttctatttgatacctgtattaatatattattttaaatttgagtcttttcttgttgcat-atagttcccttatacattttcttcttaaaggtatcccttaggtggggactgcactttctctttcttttagataacattgtttaaaaatctttcaag
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA12G37100.1 (Glycine max), 5'ss of exon 11
GTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGgtatatt-ttctttgattgcgcacctgttcttg--tgctggcagtatttatttat-atattcaggattgtgcgtaattttaatccttcatacctaaaaaatctattcgattttttattttatttttt------------tattttttattttttatttttattag-------------
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GTGCATCGTGTCCTGATAGATATTGTTTCGTCTGCTGCCAATGCTACCCGTGGTTTGGGAAGATACCCACCTTTCAAGAGAGAGgtatggtacttcattgttgtttttctgtttctacttgatacctgtattaatatatcatgttaaatttgagtcttttttcttgttgcatatagttcctttatacattttcttcttaaaggtatcccctaggtggggagtgcactttctctttcataaccttgtttaaaaatctttcaag
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G10290.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGgtatattttctttgattgcgcacctgttcttgtgctggcagtatttatttatatattcaggattgtgcgtaattttaatccttcatacctaaaaaatctattcgattttttattttatttttttattttttattttttatttttattag
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GTTCACCGAGTTCTTGTTGACATAGTTTCAGCTTCTGCAAATGCTACACCTGGACTTGGGAGATATCCTCCTTTCAAGCGAGAGgtaa-----taatgatt---------ttttggtgctt----tattcagtaatat-tttatcatttcggtaacagttattcctttctgactaatca-tcaaccag---------------------------------------------
upper sequence: Vv18s0089g00350.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G59610.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGgtatattttctttgattgcgcacctgttcttgtgctggcagtatttatttatatattcaggattgtgcgtaattttaatccttcat-acctaaaaaatctattcgattttttattttatttttttattttttattttttatttttattag
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GTTCACCGAGTGCTTGTTGACATAGTTTCAGCTTCCGCGAATGCCACACCTGGTCTTGGGAGATATCCTCCTTTTAAGAGAGAGgtaattatgcttttactgc--------tctttcagttgcatttttcgtct---tactaatagctgtttcttttcttaaataatcgtcaaccag---------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161717164|gb|FC065927.1|FC065927EST: CTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAG GTTGTGGCAATTGCAACTGCTGCACTAGATGTGTTCAAGAATGAAGCTAAG
genomic: CTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGgtatattttc ... tttttattagGTTGTGGCAATTGCAACTGCTGCACTAGATGTGTTCAAGAATGAAGCTAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGCACCGTGTCCTGGTAGATGTAGTTTCTGCTGCTGCAAATGCTACGCCAGGTCTGGGGAGATATCCTCCTTTCAAGAGAGAGgtatattttctttgattgcgcacctgttcttgtgctggcagtatttatttatatattcaggattgtgcgtaattttaatccttcatacctaaaaaatctattcgattttttattttatttttttattttttattttttatttttattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA