Sequence
atgc intronic sequence ATGC exonic sequenceTCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGgtatgagattgtacataggatataatgctttgtgatattgttggcatattgagtgtagaaatttcttgaaaatggagcagttaaccatgaaaagcgaagt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G30590.1 (Glycine max), 5'ss of exon 10
TCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGgtatgagattgtacataggatataatgctttgtgatattgttggcatattgagtgtagaaatttct----tgaaaatggagcagttaaccatgaaaagcgaagt--
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TCCTTCTAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCACAAACCTGTTGATTATGCAAAGAAGGGGCAGAAAGTAGCCATTAAGgtatgttcttggac-tgaaattagatcctctataatgaacctctc----taaactcaaacttttccccaatgaaaatggaatt-tgaaatatggattaaaaacctt
upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G37020.1 (Glycine max), 5'ss of exon 11
TCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGgtatgagattgtacataggatataatgctttgtgat--attgttggcatattgagtgtagaaatttcttgaaaatggagcagttaaccatgaaaagcgaagt
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TCCTTCTAGAGAGTTCATTGATATTGGTCGCATTGCCTCCATTGAGAATAACCATAAACCTGTTGATTATGCAAAGAAGGGACAGAAAGTAGCCATTAAGgtatgttcttggac-tgaaattagatcctctataatgaacctctctaaactcaaacttatatccttaagttgcacaatgttataatccatttatatcctta-
upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G76810.1 (Arabidopsis thaliana), 5'ss of exon 11
TCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGgtatgagattgtacatag-gatataatgctttgtgatattgttggcatattgagtgtagaaatttcttgaaaatggagcagttaaccatgaaaagcgaagt----------------------
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CCCTGGCAGAGAGTTCATCGATATTGGCCGAATTGCCTCGATTGAGAATAACCACAAGCCTGTTGACTATGCAAAGAAGGGCAACAAGGTGGCAATAAAGgtaataattggatcattctgttttaacaaggttgcaaatcttttgcttacagagaagaaaagagttatgtttgctgcggtttcagtttcacgcctcgtaatcgatggtttctttggtatacag
upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G76720.1 (Arabidopsis thaliana), 5'ss of exon 15
TCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGgtatgagattgtacataggatataatgctttgtg-atattgttggcatattgagtgtagaaatttcttgaaaatggagca-gttaaccatgaaaagcgaagt-----
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CCCGGGCAGAGAGTTCACAGATATTGGCCGCATTGCCTCTATTGAGAACAACCACAAGCCTGTTGACTATGCAGAGAAGGGCGACGAGGTGGCGATTAAGgtaataaggggatcattcccttcaacaacctttgtatagagaaag-agagagagagacaaaagttgttgaggtttcaacttgatgcttttctctggttgtataacag
upper sequence: Vv18s0076g00310.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT1G76820.1 (Arabidopsis thaliana), 5'ss of exon 11
TCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGgtatgagattgtacataggatataatg--ctttgtgatattgttggcatattgagtgtagaaatttcttgaaaatggagca-gttaaccatgaaaagcgaagt-----
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CCCGGGCAGAGAGTTCACAGATATTGGCCGCATTGCCTCTATTGAGAACAACCACAAGCCTGTTGACTATGCAGAGAAGGGCGACGAGGTGGCGATTAAGgtaataaggggatcattcccttcaacaacctttgtatagagagagagagagagagagacaaaagttgctgaggtttcaacttgatgcttttctctggttatataacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110365992|gb|EC929594.1|EC929594EST: ACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAG ATAACCAGCACCAATCCTGAGGAGCAGCAAAAGATGTTTGGAAGGCATTTT
genomic: ACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGgtatgagatt ... acttttgcagATAACCAGCACCAATCCTGAGGAGCAGCAAAAGATGTTTGGAAGGCATTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCCTCAAAGGGATTTTATTGATATTGGCCGGATTGCATCCATTGAGAATAACCACAAGCCAGTTGATATTGCCAAGAAAGGCCAGAGGGTGGCGATCAAGgtatgagattgtacataggatataatgctttgtgatattgttggcatattgagtgtagaaatttcttgaaaatggagcagttaaccatgaaaagcgaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaa