Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttgaaatgattggtgcttttcctttagttttataattattataactattgctgctgctactgctactgctactattatttatccatcttataggccctttgcgattcatgaaaattttctgataccttcag

Basic information

species Vitis vinifera
transcript Vv18s0076g00260.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA10G36210.1 (Glycine max), 5'ss of exon 14
AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttgaaatgattggtgcttttcctttagttttataattattataactattgctgctgctactgctactgctactattatttatccatcttataggccctttgcgattcatgaaaattttctgataccttcag
|||||||||||||||||| |||||||| |||||||| ||||| |||| ||   |||  || |  |   ||| |||  | | |||  || |     |||  | |  |  |    ||| |   | | || | ||                                                  
AGCTCATCATGGCTTTGGATGGGTTGGAGAATGGGCTAATACAGGgtgaga--gaacagaatactagatttactt--gctctatgtttgtacgttctaccggttttttt----ctaatataagt-ttgtatag-------------------------------------------------

upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GLYMA20G31400.1 (Glycine max), 5'ss of exon 14
AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttgaaatgattggtgcttttcctttagttttataattattataactattgctgctgctactgctactgctactattatttatccatcttataggccctttgcgattcatgaaaattttctgataccttcag
|||||||||||||||||| |||||||| |||||||| || || |||| |||    |||| | | |  | ||||| ||   || ||  | || || ||| |  |    ||| ||| |  | |  |||                                                        
AGCTCATCATGGCTTTGGATGGGTTGGAGAATGGGCTAACACAGGgtgaggacagaatgctagattttcttcctgtatgcttcta--tgttctacctagtttt----ctaatgcaa--gtttgtatag------------------------------------------------------

upper sequence: Vv18s0076g00260.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: EFJ24079 (Selaginella moellendorffii), 5'ss of exon 10
AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttgaaatgattggtgcttttcctttagttttataattattataactattgctgctgctactgctactgctactattatttatccatcttataggccctttgcgattcatgaaaattttctgataccttcag
||||||||| || ||||| ||||||||||||||||| ||| | |||| ||  |    |  ||| |  |||    || ||||   || | || |   | || | |                                                                              
AGCTCATCACGGATTTGGATGGGTTGGCGAATGGGCAAATTCTGGgtgagtat---ttcgttgttagtttcttcttcgtttctcaactgttcttcatctt-cag------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110719053|gb|EE096590.1|EE096590
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110720867|gb|EE097166.1|EE097166
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110720638|gb|EE096734.1|EE096734
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|351022377|gb|FQ445152.1|FQ445152
EST:     AAAGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AAAGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|351025753|gb|FQ426767.1|FQ426767
EST:     AAAGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AAAGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110718519|gb|EE095448.1|EE095448
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110696366|gb|EE072430.1|EE072430
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|351013632|gb|FQ429773.1|FQ429773
EST:     AAAGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AAAGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110720216|gb|EE095942.1|EE095942
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110720676|gb|EE096807.1|EE096807
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110720592|gb|EE096647.1|EE096647
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110719214|gb|EE096935.1|EE096935
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110713860|gb|EE090149.1|EE090149
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110718805|gb|EE096054.1|EE096054
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110719766|gb|EE095191.1|EE095191
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|30302844|gb|CB979638.1|CB979638
EST:     AGCTCATCATGGCTTTGATTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
EST: gi|110720643|gb|EE096746.1|EE096746
EST:     AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGG                         GTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA
genomic: AGCTCATCATGGCTTTGGTTGGGTTGGCGAATGGGCCAATACCGGgtaaggttga ... ataccttcagGTCTGAGGTTAACAGGAAGCCTGCTGGCCAGACAGACTTAATCCGGATTGA