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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTAGTTTTGTTGGAAATGTGGCAGTGCCACTACTCTGCGTCAGTGCTTTGGATGATCCAGTCTGCACTAGGGAAGCCATTCCTTGGGATGAATGCAGgtgagctgctcttttcatgtcatataacatatgctttatcttgataatttcttcttttgtcttattattttttgactcctgaactgacatctcttctatcatag

Basic information

species Vitis vinifera
transcript Vv18s0076g00210.t01
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv18s0076g00210.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: LOC_Os01g65070.2 (Oryza sativa), 5'ss of exon 12
GTGCTAGTTTTGTTGGAAATGTGGCAGTGCCACTACTCTGCGTCAGTGCTTTGGATGATCCAGTCTGCACTAGGGAAGCCATTCCTTGGGATGAATGCAGgtgagctgctcttttcatgtcatataacatatgctttatcttgataatttcttcttttgtcttattattttttgactcctgaactgacatctcttctatcatag
|||| |||| |||||| |||||| |||| ||  | || || |||| |||||||||||| ||  ||||||| ||||| ||||| ||||||||||| |||||||       | ||||  ||| | ||  ||| | |   |  |       || || | ||   |      | |||  |   |||| |                   
GTGCCAGTTATGTTGGTAATGTGTCAGTTCCCTTGCTATGTGTCAATGCTTTGGATGACCCCCTCTGCACAAGGGAGGCCATCCCTTGGGATGAGTGCAGgtt-----ttttttttttgtaaaatt-cattttcccaaagtactctggtttttgtattaagtagaagatgtttttcatttgaattag-----------------

upper sequence: Vv18s0076g00210.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G005444_T01 (Zea mays), 5'ss of exon 11
GTGCTAGTTTTGTTGGAAATGTGGCAGTGCCACTACTCTGCGTCAGTGCTTTGGATGATCCAGTCTGCACTAGGGAAGCCATTCCTTGGGATGAATGCAGgtgagctgctcttttc-atgtcatataacatatgctttatcttgataatttcttcttttgtctta---ttattttttgactcctgaactgacatctcttctatcatag---------------------------------
|||||||||  || ||||||||| |||| ||  | || ||  ||| |||||||||||||||  | ||||| ||||| || ||||||||||||||||||||||||  |  |||| |  |  ||||    |  ||   | | |       | | |   ||  ||||    | ||   | |  || | |  |||  | |   | || | |                                  
GTGCTAGTTACGTCGGAAATGTGTCAGTTCCCTTGCTTTGTATCAATGCTTTGGATGATCCTCTTTGCACAAGGGAGGCTATTCCTTGGGATGAATGCAGgtgaatttttcttgtggaactcatgctcctcatttctgaacagttctgtctatgtattaatctttaattcatcactaggatctttatttgatttatggcccataagaatgtattaatcagaagcgtcttgatttgatttag

upper sequence: Vv18s0076g00210.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: GRMZM2G011169_T01 (Zea mays), 5'ss of exon 11
GTGCTAGTTTTGTTGGAAATGTGGCAGTGCCACTACTCTGCGTCAGTGCTTTGGATGATCCAGTCTGCACTAGGGAAGCCATTCCTTGGGATGAATGCAGgtgagctgctcttttcatgtcatataacatatgctttatcttgataatttcttcttttgtcttattattttttgactcctgaactgacatctcttctatcatag
|||| | || | | || |||||| |||| ||||| || ||  ||||||| || ||||| ||  ||||||| ||||| |||||||| |||||||||||||||| | |      |   |  | ||     ||||  |||   || ||   ||  |        |    ||    ||| |                           
GTGCAAATTATATCGGTAATGTGTCAGTTCCACTGCTTTGTATCAGTGCCTTAGATGACCCCCTCTGCACAAGGGAGGCCATTCCCTGGGATGAATGCAGgtaaacatacgatgaaagattattctgaatattttttggtttaatgtgttgataaggcccttatgcatgcgctgatttag------------------------

upper sequence: Vv18s0076g00210.t01 (Vitis vinifera), 5'ss of exon 11
lower sequence: AT5G49950.1 (Arabidopsis thaliana), 5'ss of exon 11
GTGCTAGTTTTGTTGGAAATGTGGCAGTGCCACTACTCTGCGTCAGTGCTTTGGATGATCCAGTCTGCACTAGGGAAGCCATTCCTTGGGATGAATGCAGgtgagctgctcttttcat-gtcatataacatatgctttatcttgataatttcttcttttgtcttattatttt---ttgactcctgaactgacatctcttctatcatag
|| |    | ||| | |||||| || || || || || ||| |||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||| ||   |  | | | | | |   | |   || ||||       |  ||||  || | |   |  |    |   || | |     | | |||||  |||| |     
GTTCACAATATGTGGAAAATGTCGCTGTTCCGCTCCTTTGCATCAGTGCTTTGGATGATCCAGTTTGTACTAGAGAAGCTATTCCTTGGGATGAATGTAGgtaagaatccatatgcttcgaccctttaatcattctttccaccagt--tttcaactctagagctgatggactagattaatttgcacaat-acatcggttctct-----